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Solution structure of CR2 SCR 1-2 in its complex with C3d by X-ray scattering
Biology and Chemistry Report
1W2S
  •   Structure Details   Hide

    Structure Keywords

    Keywords IMMUNE SYSTEM
    Text IMMUNE SYSTEM, X-RAY SCATTERING, ANALYTICAL ULTRACENTRIFUGATION, COMPLEMENT, THROMBOSPONDIN TYPE I REPEATS, CONSTRAINED MODELLING, GLYCOPROTEIN, IMMUNOLOGY

    Polymeric Molecules

    Chain A
    Description COMPLEMENT C3 PRECURSOR 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 34379.6 
    Source Method genetically manipulated  
    Entity Name C3D 
    Chain B
    Description COMPLEMENT RECEPTOR TYPE 2 PRECURSOR, 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 15612.0 
    Source Method genetically manipulated  
    Entity Name CR2 SCR 1-2, COMPLEMENT C3D RECEPTOR, EPSTEIN-BARR VIRUS RECEPTOR, EBV RECEPTOR, CD21 ANTIGEN 

     
  •   Protein Details   Hide

    UniProtKB Information

    Chain SWS/UNP ID SWS/UNP Accession(s)
    A CO3_HUMAN P01024     
    B CR2_HUMAN C9JHD2     

    Keywords and Names

    Chain(s) RCSB Name UniProtKB Name UniProtKB Keywords

     
  •   Gene Details   Hide

    Genetic Source

    Chain B
    Common Name Human
    Scientific Name Homo sapiens  
    Host Scientific Name Pichia pastoris  


    Chain A
    Common Name Human
    Scientific Name Homo sapiens  
    Host Scientific Name Escherichia coli  
    Host Strain Bl21
    Host Plasmid Name PET11B


    Genome Information

    Chromosome Locus Gene ID Gene Name Symbol
    1 1q32 1380     complement component (3d/Epstein Barr virus) receptor 2 CR2    
    19 19p13.3-p13.2 718     complement component 3 C3    

    Single Nucleotide Polymorphisms (from LS-SNP database)

    SNP ID LsSnp Link dbSNP Link Chain PDB position Amino acid changes Secondary structure Solvent Accessibility Chromosome Chromosome position Ligand
    rs148698696 LS-SNP   dbSNP   A 39 E - > D Coil 0% (Buried) 19 6694500
    rs146026441 LS-SNP   dbSNP   A 51 G - > R Coil 0% (Buried) 19 6694466
    rs142393845 LS-SNP   dbSNP   A 67 R - > S Coil 0% (Buried) 19 6693473
    rs149259834 LS-SNP   dbSNP   A 93 F - > L Coil 0% (Buried) 19 6693067
    rs145346653 LS-SNP   dbSNP   A 93 F - > L Coil 0% (Buried) 19 6693069
    rs121909584 LS-SNP   dbSNP   A 101 A - > V Coil 0% (Buried) 19 6693044
    rs121909585 LS-SNP   dbSNP   A 122 D - > N Coil 0% (Buried) 19 6692982
    rs138900723 LS-SNP   dbSNP   A 141 R - > W Coil 0% (Buried) 19 6690729
    rs150237828 LS-SNP   dbSNP   A 151 T - > M Coil 0% (Buried) 19 6690698
    rs201865666 LS-SNP   dbSNP   A 161 A - > T Coil 0% (Buried) 19 6690669
    rs141031839 LS-SNP   dbSNP   A 183 L - > I Coil 0% (Buried) 19 6686877
    rs11569534 LS-SNP   dbSNP   A 231 G - > D Coil 0% (Buried) 19 6686274
    rs147113695 LS-SNP   dbSNP   A 237 V - > M Coil 0% (Buried) 19 6686257
    rs149007163 LS-SNP   dbSNP   A 258 P - > L Coil 0% (Buried) 19 6686193
    rs147866119 LS-SNP   dbSNP   A 261 R - > H Coil 0% (Buried) 19 6686184
    rs112747284 LS-SNP   dbSNP   A 274 G - > CR Coil 0% (Buried) 19 6686146
    rs150906379 LS-SNP   dbSNP   B 11 P - > L Coil 0% (Buried) 1 207639892
    rs201201097 LS-SNP   dbSNP   B 17 R - > W Coil 0% (Buried) 1 207639909
    rs45573035 LS-SNP   dbSNP   B 51 T - > S Coil 0% (Buried) 1 207640012
    rs147860820 LS-SNP   dbSNP   B 65 K - > R Coil 0% (Buried) 1 207640054
    rs201032699 LS-SNP   dbSNP   B 81 P - > T Coil 0% (Buried) 1 207640101
    rs141434018 LS-SNP   dbSNP   B 83 G - > A Coil 0% (Buried) 1 207640108
    rs200595124 LS-SNP   dbSNP   B 110 G - > R Coil 0% (Buried) 1 207640188
    rs3189023 LS-SNP   dbSNP   B 132 S - > N Coil 0% (Buried) 1 207640255
    rs138760137 LS-SNP   dbSNP   B 135 P - > L Coil 0% (Buried) 1 207641878