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CRYSTAL STRUCTURE OF THE PDK1 PLECKSTRIN HOMOLOGY (PH) DOMAIN BOUND TO INOSITOL (1,3,4,5)-TETRAKISPHOSPHATE
Biology and Chemistry Report
1W1D
  •   Structure Details   Hide

    Structure Keywords

    Keywords TRANSFERASE
    Text TRANSFERASE, PDK1, PHOSPHOINOSITIDE DEPENDENT PROTEIN KINASE 1, PKB, PLECKSTRIN HOMOLOGY DOMAIN, INOSITOL PHOSPHATE, PHOSPHOINOSITIDE, SIGNAL TRANSDUCTION, PI3-KINASE, SERINE/THREONINE PROTEIN KINASE

    Polymeric Molecules

    Chain A
    Description 3-PHOSPHOINOSITIDE DEPENDENT PROTEIN KINASE-1 
    Fragment PLECKSTRIN HOMOLOGY DOMAIN, RESIDUES 409-556 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 17816.4 
    Source Method genetically manipulated  
    Entity Name HPDK1 

    Ligands and Prosthetic Groups

    ID Name Chemical Formula Weight Ligand Structure
    4IP  INOSITOL-(1,3,4,5)-TETRAKISPHOSPHATE  C6 H16 O18 P4   500.08  View 
    AU  GOLD ION  Au   196.97  View 
    GOL  GLYCEROL  C3 H8 O3   92.09  View 
     
  •   Protein Details   Hide

    UniProtKB Information

    Chain SWS/UNP ID SWS/UNP Accession(s)
    A PDPK1_HUMAN H0Y4Z0     

    Keywords and Names

    Chain(s) RCSB Name UniProtKB Name UniProtKB Keywords

    EC, Associated Pathways and Catalytic Sites

    Chain(s) IUBMB KEGG BioCyc
    2.7.11.1      
     
  •   Gene Details   Hide

    Genetic Source

    Chain A
    Common Name Human
    Scientific Name Homo sapiens  
    Host Scientific Name Escherichia coli  
    Host Strain Bl21
    Host Plasmid Name PGEX


    Genome Information

    Chromosome Locus Gene ID Gene Name Symbol
    16 16p13.3 5170     3-phosphoinositide dependent protein kinase 1 PDPK1    

    Single Nucleotide Polymorphisms (from LS-SNP database)

    SNP ID LsSnp Link dbSNP Link Chain PDB position Amino acid changes Secondary structure Solvent Accessibility Chromosome Chromosome position Ligand
    rs149931764 LS-SNP   dbSNP   A 411 N - > S Coil 62% (Exposed) 16 2636783
    rs145034828 LS-SNP   dbSNP   A 429 Q - > E Coil 69% (Exposed) 16 2636836
    rs146217676 LS-SNP   dbSNP   A 440 E - > V Helix 69% (Exposed) 16 2636870
    rs148008907 LS-SNP   dbSNP   A 546 R - > Q Helix 52% (Exposed) 16 2647734