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HUMAN VH1-RELATED DUAL-SPECIFICITY PHOSPHATASE
Biology and Chemistry Report
1VHR
  •   Structure Details   Hide

    Structure Keywords

    Keywords HYDROLASE
    Text HYDROLASE, PROTEIN DUAL-SPECIFICITY PHOSPHATASE

    Polymeric Molecules

    Chain A,B
    Description HUMAN VH1-RELATED DUAL-SPECIFICITY PHOSPHATASE VHR 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 20370.2 
    Source Method genetically manipulated  
    Entity Name VHR 

    Ligands and Prosthetic Groups

    ID Name Chemical Formula Weight Ligand Structure
    EPE  4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID  C8 H18 N2 O4 S   238.31  View 
    SO4  SULFATE ION  O4 S   96.06  View 
     
  •   Protein Details   Hide

    UniProtKB Information

    Chain SWS/UNP ID SWS/UNP Accession(s)
    A,B DUS3_HUMAN D3DX45     

    Keywords and Names

    Chain(s) RCSB Name UniProtKB Name UniProtKB Keywords

    EC, Associated Pathways and Catalytic Sites

    Chain(s) IUBMB KEGG BioCyc
    A B  3.1.3.16      
    A B  3.1.3.48      
    C: Cellular Location | F: Molecular Function | P: Biological Process
    Chain A,B
    GO ID   Ontology GO Term Definition
    188   Inactivation of Mapk Activity  Any Process That Terminates the Activity of the Active Enzyme Map Kinase. 
    1701   In Utero Embryonic Development  The Process Whose Specific Outcome Is the Progression of the Embryo in the Uterus Over Time From Formation of the Zygote in the Oviduct to Birth. an Example of This Process Is Found in Mus Musculus. 
    2224   Toll Like Receptor Signaling Pathway  Any Series of Molecular Signals Generated As a Consequence of Binding to a Toll Like Receptor. Toll Like Receptors Directly Bind Pattern Motifs From a Variety of Microbial Sources to Initiate Innate Immune Response. 
    2755   Myd88 Dependent Toll Like Receptor Signaling Pathway  Any Series of Molecular Signals Generated As a Consequence of Binding to a Toll Like Receptor Where the Myd88 Adaptor Molecule Mediates Transduction of the Signal. Toll Like Receptors Directly Bind Pattern Motifs From a Variety of Microbial Sources to Initiate Innate Immune Response. 
    2756   Myd88 Independent Toll Like Receptor Signaling Pathway  Any Series of Molecular Signals Generated As a Consequence of Binding to a Toll Like Receptor Not Relying On the Myd88 Adaptor Molecule. Toll Like Receptors Directly Bind Pattern Motifs From a Variety of Microbial Sources to Initiate Innate Immune Response. 
    6470   Protein Dephosphorylation  The Process of Removing One or More Phosphoric Residues From a Protein. 
    16311   Dephosphorylation  The Process of Removing One or More Phosphoric (ester or Anhydride) Residues From a Molecule. 
    34134   Toll Like Receptor 2 Signaling Pathway  Any Series of Molecular Signals Generated As a Consequence of Binding to Toll Like Receptor 2. 
    34138   Toll Like Receptor 3 Signaling Pathway  Any Series of Molecular Signals Generated As a Consequence of Binding to Toll Like Receptor 3. 
    34142   Toll Like Receptor 4 Signaling Pathway  Any Series of Molecular Signals Generated As a Consequence of Binding to Toll Like Receptor 4. 
    34146   Toll Like Receptor 5 Signaling Pathway  Any Series of Molecular Signals Generated As a Consequence of Binding to Toll Like Receptor 5. 
    34162   Toll Like Receptor 9 Signaling Pathway  Any Series of Molecular Signals Generated As a Consequence of Binding to Toll Like Receptor 9. 
    34166   Toll Like Receptor 10 Signaling Pathway  Any Series of Molecular Signals Generated As a Consequence of Binding to Toll Like Receptor 10. 
    35335   Peptidyl Tyrosine Dephosphorylation  The Removal of Phosphoric Residues From Peptidyl O Phospho Tyrosine to Form Peptidyl Tyrosine. 
    35666   Trif Dependent Toll Like Receptor Signaling Pathway  Any Series of Molecular Signals Generated As a Consequence of Binding to a Toll Like Receptor Where the Trif Adaptor Mediates Transduction of the Signal. Toll Like Receptors Directly Bind Pattern Motifs From a Variety of Microbial Sources to Initiate Innate Immune Response. 
    38123   Toll Like Receptor Tlr1:tlr2 Signaling Pathway  A Series of Molecular Signals Initiated by the Binding of a Heterodimeric Tlr1:tlr2 Complex to One of It's Physiological Ligands Followed by Transmission of the Signal by the Activated Receptor and Ending with Regulation of a Downstream Cellular Process E.g. Transcription. 
    38124   Toll Like Receptor Tlr6:tlr2 Signaling Pathway  A Series of Molecular Signals Initiated by the Binding of a Heterodimeric Tlr6:tlr2 Complex to One of It's Physiological Ligands Followed by Transmission of the Signal by the Activated Receptor and Ending with Regulation of a Downstream Cellular Process E.g. Transcription. 
    43409   Negative Regulation of Mapk Cascade  Any Process That Stops Prevents or Reduces the Frequency Rate or Extent of Signal Transduction Mediated by the Mapkkk Cascade. 
    45087   Innate Immune Response  Innate Immune Responses Are Defense Responses Mediated by Germline Encoded Components That Directly Recognize Components of Potential Pathogens. 
    45931   Positive Regulation of Mitotic Cell Cycle  Any Process That Activates or Increases the Rate or Extent of Progression Through the Mitotic Cell Cycle. 
    46329   Negative Regulation of Jnk Cascade  Any Process That Stops Prevents or Reduces the Frequency Rate or Extent of Signal Transduction Mediated by the Jnk Cascade. 
    48011   Neurotrophin Trk Receptor Signaling Pathway  A Series of Molecular Signals Initiated by the Binding of a Neurotrophin to a Receptor On the Surface of the Target Cell Where the Receptor Possesses Tyrosine Kinase Activity and Ending with Regulation of a Downstream Cellular Process E.g. Transcription. 
    50860   Negative Regulation of T Cell Receptor Signaling Pathway  Any Process That Stops Prevents or Reduces the Frequency Rate or Extent of Signaling Pathways Initiated by the Cross Linking of an Antigen Receptor On a T Cell. 
    50868   Negative Regulation of T Cell Activation  Any Process That Stops Prevents or Reduces the Frequency Rate or Extent of T Cell Activation. 
    51403   Stress Activated Mapk Cascade  A Series of Molecular Signals in Which a Stress Activated Map Kinase Cascade Relays One or More of the Signals; Map Kinase Cascades Involve At Least Three Protein Kinase Activities and Culminate in the Phosphorylation and Activation of a Map Kinase. 
    70373   Negative Regulation of Erk1 and Erk2 Cascade  Any Process That Stops Prevents or Reduces the Frequency Rate or Extent of Signal Transduction Mediated by the Erk1 and Erk2 Cascade. 
    1772   Immunological Synapse  An Area of Close Contact Between a Lymphocyte (t B or Natural Killer Cell) and a Target Cell Formed Through the Clustering of Particular Signaling and Adhesion Molecules and Their Associated Membrane Rafts On Both the Lymphocyte and the Target Cell and Facilitating Activation of the Lymphocyte Transfer of Membrane From the Target Cell to the Lymphocyte and in Some Situations Killing of the Target Cell Through Release of Secretory Granules And/or Death Pathway Ligand Receptor Interaction. 
    5634   Nucleus  A Membrane Bounded Organelle of Eukaryotic Cells in Which Chromosomes Are Housed and Replicated. in Most Cells the Nucleus Contains All of the Cell's Chromosomes Except the Organellar Chromosomes and Is the Site of RNA Synthesis and Processing. in Some Species or in Specialized Cell Types RNA Metabolism or DNA Replication May Be Absent. 
    5654   Nucleoplasm  That Part of the Nuclear Content Other Than the Chromosomes or the Nucleolus. 
    5737   Cytoplasm  All of the Contents of a Cell Excluding the Plasma Membrane and Nucleus But Including Other Subcellular Structures. 
    5829   Cytosol  The Part of the Cytoplasm That Does Not Contain Organelles But Which Does Contain Other Particulate Matter Such As Protein Complexes. 
    70062   Extracellular Vesicular Exosome  A Membrane Bounded Vesicle That Is Released Into the Extracellular Region by Fusion of the Limiting Endosomal Membrane of a Multivesicular Body with the Plasma Membrane. 
    4721   Phosphoprotein Phosphatase Activity  Catalysis of the Reaction: a Phosphoprotein + H2o = a Protein + Phosphate. Together with Protein Kinases These Enzymes Control the State of Phosphorylation of Cell Proteins and Thereby Provide an Important Mechanism For Regulating Cellular Activity. 
    4725   Protein Tyrosine Phosphatase Activity  Catalysis of the Reaction: Protein Tyrosine Phosphate + H2o = Protein Tyrosine + Phosphate. 
    8138   Protein Tyrosine/serine/threonine Phosphatase Activity  Catalysis of the Reactions: Protein Serine + H2o = Protein Serine + Phosphate; Protein Threonine Phosphate + H2o = Protein Threonine + Phosphate; and Protein Tyrosine Phosphate + H2o = Protein Tyrosine + Phosphate. 
    16787   Hydrolase Activity  Catalysis of the Hydrolysis of Various Bonds E.g. C O C N C C Phosphoric Anhydride Bonds Etc. Hydrolase Is the Systematic Name For Any Enzyme of EC Class 3. 
    16791   Phosphatase Activity  Catalysis of the Hydrolysis of Phosphoric Monoesters Releasing Inorganic Phosphate. 
    19901   Protein Kinase Binding  Interacting Selectively and Non Covalently with a Protein Kinase Any Enzyme That Catalyzes the Transfer of a Phosphate Group Usually From ATP to a Protein Substrate. 
    33549   Map Kinase Phosphatase Activity  Catalysis of the Reaction: a Phosphorylated Map Kinase + H2o = a Map Kinase + Phosphate. 


     
  •   Gene Details   Hide

    Genetic Source

    Chain A,B
    Common Name Human
    Scientific Name Homo sapiens  
    Genus Homo
    Host Scientific Name Escherichia coli bl21(de3)  
    Host Genus Escherichia
    Host Species Escherichia Coli
    Host Strain Bl21(de3)
    Host Plasmid Name PT7-7-VHR
    Description Original Gene Gdb\:dusp3; Vhr Chromosome Map Position 17q21


    Genome Information

    Chromosome Locus Gene ID Gene Name Symbol
    17 17q21 1845     dual specificity phosphatase 3 DUSP3    

    Single Nucleotide Polymorphisms (from LS-SNP database)

    SNP ID LsSnp Link dbSNP Link Chain PDB position Amino acid changes Secondary structure Solvent Accessibility Chromosome Chromosome position Ligand
    rs200953860 LS-SNP   dbSNP   A 19 G - > S Bend 56% (Exposed) 17 41856238
    rs141479120 LS-SNP   dbSNP   A 42 A - > V Helix 10% (Intermediate) 17 41856168
    rs144239960 LS-SNP   dbSNP   A 74 N - > S Coil 43% (Exposed) 17 41852211
    rs138980602 LS-SNP   dbSNP   A 91 N - > S Coil 45% (Exposed) 17 41852160
    rs142204195 LS-SNP   dbSNP   A 93 T - > A Bend 44% (Exposed) 17 41852155
    rs138129767 LS-SNP   dbSNP   A 119 R - > W Coil 29% (Intermediate) 17 41847180
    rs146976455 LS-SNP   dbSNP   A 119 R - > Q Coil 29% (Intermediate) 17 41847179
    rs200022065 LS-SNP   dbSNP   A 122 V - > I Beta Ladder 0% (Buried) 17 41847171
    rs151166513 LS-SNP   dbSNP   A 125 R - > W Bend 32% (Intermediate) 17 41847162 EPE
    rs142085768 LS-SNP   dbSNP   A 130 R - > H Helix 2% (Buried) 17 41847146 EPE
    rs202171863 LS-SNP   dbSNP   A 137 A - > T Helix 0% (Buried) 17 41847126
    rs149027195 LS-SNP   dbSNP   A 140 M - > T Helix 0% (Buried) 17 41847116
    rs199941926 LS-SNP   dbSNP   A 152 S - > G Helix 35% (Intermediate) 17 41847081