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STRUCTURE OF HUMAN PDK1 KINASE DOMAIN IN COMPLEX WITH BIM-3
Biology and Chemistry Report
1UU9
  •   Structure Details   Hide

    Structure Keywords

    Keywords TRANSFERASE
    Text PROTEIN KINASE, PKB, PDK1, INHIBITOR, LY333531, BISINDOLYL MALEIMIDE, BIM-1, DIABETES, CANCER, TRANSFERASE, SERINE/THREONINE-PROTEIN KINASE

    Polymeric Molecules

    Chain A
    Description 3-PHOSPHOINOSITIDE DEPENDENT PROTEIN KINASE-1 
    Fragment KINASE DOMAIN, RESIDUES 22-307 
    Nonstandard Linkage no 
    Nonstandard Monomers yes 
    Polymer Type polypeptide(L) 
    Formula Weight 33141.4 
    Source Method genetically manipulated  
    Entity Name HPDK1 

    Ligands and Prosthetic Groups

    ID Name Chemical Formula Weight Ligand Structure
    BI3  3-[1-(3-AMINOPROPYL)-1H-INDOL-3-YL]-4-(1H-INDOL-3-YL)-1H-PYRROLE-2,5-DIONE  C23 H20 N4 O2   384.43  View 
    GOL  GLYCEROL  C3 H8 O3   92.09  View 
    SO4  SULFATE ION  O4 S   96.06  View 
     
  •   Protein Details   Hide

    UniProtKB Information

    Chain SWS/UNP ID SWS/UNP Accession(s)
    A PDPK1_HUMAN H0Y4Z0     

    Keywords and Names

    Chain(s) RCSB Name UniProtKB Name UniProtKB Keywords

    EC, Associated Pathways and Catalytic Sites

    Chain(s) IUBMB KEGG BioCyc Catalytic Site(s)
    2.7.11.1        

    Protein Analyses

    Measured Binding Affinities   

     
  •   Gene Details   Hide

    Genetic Source

    Chain A
    Common Name Fall Armyworm
    Scientific Name Spodoptera frugiperda  
    Cell Line Sf21
    Host Scientific Name Spodoptera frugiperda  
    Host Cell Line Sf21
    Host Vector Type Baculovirus
    Host Plasmid Name PFASTBAC1
    Description Baculovirus Infected


    Genome Information

    Chromosome Locus Gene ID Gene Name Symbol
    16 16p13.3 5170     3-phosphoinositide dependent protein kinase 1 PDPK1    

    Single Nucleotide Polymorphisms (from LS-SNP database)

    SNP ID LsSnp Link dbSNP Link Chain PDB position Amino acid changes Secondary structure Solvent Accessibility Chromosome Chromosome position Ligand
    rs79495278 LS-SNP   dbSNP   A 182 T - > I Helix 0% (Buried) 16 2615632
    rs77608557 LS-SNP   dbSNP   A 198 G - > S Helix 80% (Exposed) 16 2615679
    rs79032757 LS-SNP   dbSNP   A 198 G - > D Helix 80% (Exposed) 16 2615680
    rs144186731 LS-SNP   dbSNP   A 255 T - > M Helix 62% (Exposed) 16 2627480