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VHS domain of human GGA1 complexed with C-terminal peptide from BACE
Biology and Chemistry Report
  •   Structure Details   Hide

    Structure Keywords

    Keywords PROTEIN TRANSPORT/Hydrolase

    Polymeric Molecules

    Chain A,B
    Description ADP-ribosylation factor binding protein GGA1 
    Fragment VHS domain, N-terminal domain 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 16814.6 
    Source Method genetically manipulated  
    Entity Name GGA1 
    Chain C
    Description C-terminal peptide from Beta-secretase 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 1390.5 
    Source Method synthetic  
    Entity Name C-terminal peptide from BACE 

  •   Protein Details   Hide

    UniProtKB Information

    Chain SWS/UNP ID SWS/UNP Accession(s)
    A,B GGA1_HUMAN A8K3D3     
    C BACE1_HUMAN A0M8W7     

    Keywords and Names

    Chain(s) RCSB Name UniProtKB Name UniProtKB Keywords

    EC, Associated Pathways and Catalytic Sites

    Chain(s) IUBMB KEGG BioCyc      
    C: Cellular Location | F: Molecular Function | P: Biological Process
    Chain A,B
    GO ID   Ontology GO Term Definition
    6886   Intracellular Protein Transport  The Directed Movement of Proteins in a Cell Including the Movement of Proteins Between Specific Compartments or Structures Within a Cell Such As Organelles of a Eukaryotic Cell. 

  •   Gene Details   Hide

    Genetic Source

    Chain A,B
    Common Name Human
    Scientific Name Homo sapiens  
    Genus Homo
    Host Scientific Name Escherichia coli bl21  
    Host Genus Escherichia
    Host Species Escherichia Coli
    Host Strain Bl21
    Host Vector Type Plasmid
    Host Plasmid Name pGEX4T-2

    Genome Information

    Chromosome Locus Gene ID Gene Name Symbol
    11 11q23.2-q23.3 23621     beta-site APP-cleaving enzyme 1 BACE1    
    22 22q13.31 26088     golgi-associated, gamma adaptin ear containing, ARF binding protein 1 GGA1    

    Single Nucleotide Polymorphisms (from LS-SNP database)

    SNP ID LsSnp Link dbSNP Link Chain PDB position Amino acid changes Secondary structure Solvent Accessibility Chromosome Chromosome position Ligand
    rs151193060 LS-SNP   dbSNP   A 35 E - > K Helix 45% (Exposed) 22 38010256
    rs11543985 LS-SNP   dbSNP   A 119 L - > IV Helix 2% (Buried) 22 38016296
    rs13057290 LS-SNP   dbSNP   A 130 V - > L Helix 67% (Exposed) 22 38016329
    rs148782175 LS-SNP   dbSNP   A 138 M - > I Helix 10% (Intermediate) 22 38016355
    rs146936287 LS-SNP   dbSNP   A 145 V - > I Coil 17% (Intermediate) 22 38016825
    rs199984681 LS-SNP   dbSNP   A 146 K - > N Coil 88% (Exposed) 22 38016830