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TUMOR SUPPRESSOR P53 COMPLEXED WITH DNA
Biology and Chemistry Report
1TUP
  •   Structure Details   Hide

    Structure Keywords

    Keywords ANTITUMOR PROTEIN/DNA
    Text ANTIGEN P53, ANTITUMOR PROTEIN-DNA COMPLEX

    Polymeric Molecules

    Chain E
    Description DNA (5'-D(*TP*TP*TP*CP*CP*TP*AP*GP*AP*CP*TP*TP*GP*CP*CP*CP*A P*AP*TP*TP*A)-3') 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polydeoxyribonucleotide 
    Formula Weight 6348.2 
    Source Method synthetic  
    Chain F
    Description DNA (5'-D(*AP*TP*AP*AP*TP*TP*GP*GP*GP*CP*AP*AP*GP*TP*CP*TP*A P*GP*GP*AP*A)-3') 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polydeoxyribonucleotide 
    Formula Weight 6535.3 
    Source Method synthetic  
    Chain A,B,C
    Description PROTEIN (P53 TUMOR SUPPRESSOR ) 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 24587.0 
    Source Method genetically manipulated  

    Ligands and Prosthetic Groups

    ID Name Chemical Formula Weight Ligand Structure
    ZN  ZINC ION  Zn   65.41  View 
     
  •   Protein Details   Hide

    UniProtKB Information

    Chain SWS/UNP ID SWS/UNP Accession(s)
    A,B,C P53_HUMAN P04637     

    Keywords and Names

    Chain(s) RCSB Name UniProtKB Name UniProtKB Keywords

    C: Cellular Location | F: Molecular Function | P: Biological Process
    Chain A,B,C
    GO ID   Ontology GO Term Definition
    6355   Regulation of Transcription DNA Templated  Any Process That Modulates the Frequency Rate or Extent of Cellular DNA Templated Transcription. 
    6915   Apoptotic Process  A Programmed Cell Death Process Which Begins When a Cell Receives an Internal (e.g. DNA Damage) or External Signal (e.g. an Extracellular Death Ligand) and Proceeds Through a Series of Biochemical Events (signaling Pathway Phase) Which Trigger an Execution Phase. the Execution Phase Is the Last Step of an Apoptotic Process and Is Typically Characterized by Rounding Up of the Cell Retraction of Pseudopodes Reduction of Cellular Volume (pyknosis) Chromatin Condensation Nuclear Fragmentation (karyorrhexis) Plasma Membrane Blebbing and Fragmentation of the Cell Into Apoptotic Bodies. When the Execution Phase Is Completed the Cell Has Died. 
    5634   Nucleus  A Membrane Bounded Organelle of Eukaryotic Cells in Which Chromosomes Are Housed and Replicated. in Most Cells the Nucleus Contains All of the Cell's Chromosomes Except the Organellar Chromosomes and Is the Site of RNA Synthesis and Processing. in Some Species or in Specialized Cell Types RNA Metabolism or DNA Replication May Be Absent. 
    3677   DNA Binding  Any Molecular Function by Which a Gene Product Interacts Selectively and Non Covalently with DNA (deoxyribonucleic Acid). 
    3700   Sequence Specific DNA Binding Transcription Factor Activity  Interacting Selectively and Non Covalently with a Specific DNA Sequence in Order to Modulate Transcription. the Transcription Factor May or May Not Also Interact Selectively with a Protein or Macromolecular Complex. 
    44212   Transcription Regulatory Region DNA Binding  Interacting Selectively and Non Covalently with a DNA Region That Regulates the Transcription of a Region of DNA Which May Be a Gene Cistron or Operon. Binding May Occur As a Sequence Specific Interaction or As an Interaction Observed Only Once a Factor Has Been Recruited to the DNA by Other Factors. 


     
  •   Gene Details   Hide

    Genetic Source

    Chain A,B,C
    Common Name Human
    Scientific Name Homo sapiens  
    Genus Homo
    Cell Type Human Vulva Carcinoma
    Cell Line A431
    Host Scientific Name Escherichia coli  
    Host Genus Escherichia
    Host Plasmid Name PET3D


    Genome Information

    Chromosome Locus Gene ID Gene Name Symbol
    17 17p13.1 7157     tumor protein p53 TP53    

    Single Nucleotide Polymorphisms (from LS-SNP database)

    SNP ID LsSnp Link dbSNP Link Chain PDB position Amino acid changes Secondary structure Solvent Accessibility Chromosome Chromosome position Ligand
    rs11540654 LS-SNP   dbSNP   A 110 R - > LP Beta Ladder 27% (Intermediate) 17 7579358
    rs137852792 LS-SNP   dbSNP   A 129 A - > V Turn 83% (Exposed) 17 7578544
    rs28934873 LS-SNP   dbSNP   A 133 M - > T Beta Ladder 1% (Buried) 17 7578532
    rs28934875 LS-SNP   dbSNP   A 138 A - > P Turn 38% (Exposed) 17 7578518
    rs28934874 LS-SNP   dbSNP   A 151 P - > ST Coil 10% (Intermediate) 17 7578479
    rs137852789 LS-SNP   dbSNP   A 154 G - > S Turn 51% (Exposed) 17 7578470
    rs121912654 LS-SNP   dbSNP   A 157 V - > F Beta Ladder 0% (Buried) 17 7578461
    rs193920817 LS-SNP   dbSNP   A 161 A - > T Beta Ladder 10% (Intermediate) 17 7578449
    rs148924904 LS-SNP   dbSNP   A 163 Y - > C Beta Ladder 0% (Buried) 17 7578442
    rs138729528 LS-SNP   dbSNP   A 175 R - > G Coil 0% (Buried) 17 7578407
    rs28934578 LS-SNP   dbSNP   A 175 R - > H Coil 0% (Buried) 17 7578406
    rs147002414 LS-SNP   dbSNP   A 177 P - > S Helix 29% (Intermediate) 17 7578401
    rs72661117 LS-SNP   dbSNP   A 184 D - > N Coil 29% (Intermediate) 17 7578380
    rs150607408 LS-SNP   dbSNP   A 185 S - > N Coil 61% (Exposed) 17 7578376
    rs121912665 LS-SNP   dbSNP   A 189 A - > V Bend 5% (Buried) 17 7578283
    rs35163653 LS-SNP   dbSNP   A 217 V - > M Beta Ladder 0% (Buried) 17 7578200
    rs121912666 LS-SNP   dbSNP   A 220 Y - > S Coil 12% (Intermediate) 17 7578190
    rs146340390 LS-SNP   dbSNP   A 222 P - > L Coil 60% (Exposed) 17 7578184
    rs138983188 LS-SNP   dbSNP   A 223 P - > H Coil 26% (Intermediate) 17 7578181
    rs144340710 LS-SNP   dbSNP   A 235 N - > S Beta Ladder 10% (Intermediate) 17 7577577
    rs193920789 LS-SNP   dbSNP   A 238 C - > W Bend 0% (Buried) 17 7577567 ZN
    rs28934573 LS-SNP   dbSNP   A 241 S - > F Turn 54% (Exposed) 17 7577559
    rs121912655 LS-SNP   dbSNP   A 242 C - > Y Coil 13% (Intermediate) 17 7577556 ZN
    rs28934572 LS-SNP   dbSNP   A 244 G - > D Turn 40% (Exposed) 17 7577550
    rs121912656 LS-SNP   dbSNP   A 245 G - > D Turn 2% (Buried) 17 7577547
    rs28934575 LS-SNP   dbSNP   A 245 G - > CS Turn 2% (Buried) 17 7577548
    rs11540652 LS-SNP   dbSNP   A 248 R - > Q Turn 68% (Exposed) 17 7577538
    rs121912651 LS-SNP   dbSNP   A 248 R - > W Turn 68% (Exposed) 17 7577539
    rs28934571 LS-SNP   dbSNP   A 249 R - > S Coil 10% (Intermediate) 17 7577534
    rs121912653 LS-SNP   dbSNP   A 252 L - > P Beta Ladder 7% (Buried) 17 7577526
    rs28934577 LS-SNP   dbSNP   A 257 L - > Q Beta Ladder 1% (Buried) 17 7577511
    rs121912652 LS-SNP   dbSNP   A 258 E - > K Beta Ladder 8% (Buried) 17 7577509
    rs200579969 LS-SNP   dbSNP   A 262 G - > S Coil 46% (Exposed) 17 7577154
    rs72661119 LS-SNP   dbSNP   A 263 N - > D Coil 61% (Exposed) 17 7577151
    rs193920774 LS-SNP   dbSNP   A 266 G - > E Beta Ladder 0% (Buried) 17 7577141
    rs55832599 LS-SNP   dbSNP   A 267 R - > W Beta Ladder 15% (Intermediate) 17 7577139
    rs121912657 LS-SNP   dbSNP   A 272 V - > L Beta Ladder 2% (Buried) 17 7577124
    rs28934576 LS-SNP   dbSNP   A 273 R - > H Beta Ladder 26% (Intermediate) 17 7577120
    rs121913343 LS-SNP   dbSNP   A 273 R - > C Beta Ladder 26% (Intermediate) 17 7577121
    rs17849781 LS-SNP   dbSNP   A 278 P - > A Helix 0% (Buried) 17 7577106
    rs193920853 LS-SNP   dbSNP   A 280 R - > I Helix 49% (Exposed) 17 7577099
    rs121912660 LS-SNP   dbSNP   A 280 R - > T Helix 49% (Exposed) 17 7577099
    rs28934574 LS-SNP   dbSNP   A 282 R - > W Helix 15% (Intermediate) 17 7577094
    rs149633775 LS-SNP   dbSNP   A 283 R - > C Helix 50% (Exposed) 17 7577091
    rs121912667 LS-SNP   dbSNP   A 285 E - > V Helix 23% (Intermediate) 17 7577084
    rs112431538 LS-SNP   dbSNP   A 285 E - > K Helix 23% (Intermediate) 17 7577085