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NFKB P50 HOMODIMER BOUND TO DNA
Biology and Chemistry Report
1SVC
  •   Structure Details   Hide

    Structure Keywords

    Keywords TRANSCRIPTION/DNA
    Text DNA-BINDING, TRANSCRIPTION REGULATION, ACTIVATOR, NUCLEAR PROTEIN, PHOSPHORYLATION, DNA, TRANSCRIPTION-DNA COMPLEX

    Polymeric Molecules

    Chain D
    Description DNA (5'-D(*AP*GP*AP*TP*GP*GP*GP*GP*AP*AP*TP*CP*CP*CP*CP*TP*A P*GP*A)-3') 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polydeoxyribonucleotide 
    Formula Weight 5878.9 
    Source Method synthetic  
    Chain P
    Description PROTEIN (NUCLEAR FACTOR KAPPA-B (NF-KB)) 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 41129.2 
    Source Method genetically manipulated  

    Entity Keywords

    Entity Id EC Number Fragment Mutation Text
    n/a  n/a  n/a  MUTANT C62A 
     
  •   Protein Details   Hide

    UniProtKB Information

    Chain SWS/UNP ID SWS/UNP Accession(s)
    P NFKB1_HUMAN P19838     

    C: Cellular Location | F: Molecular Function | P: Biological Process
    Chain P
    GO ID   Ontology GO Term Definition
    6355   Regulation of Transcription DNA Templated  Any Process That Modulates the Frequency Rate or Extent of Cellular DNA Templated Transcription. 
    6357   Regulation of Transcription From RNA Polymerase Ii Promoter  Any Process That Modulates the Frequency Rate or Extent of Transcription From an RNA Polymerase Ii Promoter. 
    5634   Nucleus  A Membrane Bounded Organelle of Eukaryotic Cells in Which Chromosomes Are Housed and Replicated. in Most Cells the Nucleus Contains All of the Cell's Chromosomes Except the Organellar Chromosomes and Is the Site of RNA Synthesis and Processing. in Some Species or in Specialized Cell Types RNA Metabolism or DNA Replication May Be Absent. 
    5737   Cytoplasm  All of the Contents of a Cell Excluding the Plasma Membrane and Nucleus But Including Other Subcellular Structures. 
    3700   Transcription Factor Activity Sequence Specific DNA Binding  Interacting Selectively and Non Covalently with a Specific DNA Sequence in Order to Modulate Transcription. the Transcription Factor May or May Not Also Interact Selectively with a Protein or Macromolecular Complex. 


     
  •   Gene Details   Hide

    Genetic Source

    Chain P
    Common Name Human
    Scientific Name Homo sapiens  
    Genus Homo


    Genome Information

    Chromosome Locus Gene ID Gene Name Symbol
    4 4q24 4790     nuclear factor of kappa light polypeptide gene enhancer in B-cells 1 NFKB1    

    Single Nucleotide Polymorphisms (from LS-SNP database)

    SNP ID LsSnp Link dbSNP Link Chain PDB position Amino acid changes Secondary structure Solvent Accessibility Chromosome Chromosome position Ligand
    rs199574943 LS-SNP   dbSNP   P 135 G - > S Beta Ladder 13% (Intermediate) 4 103488291
    rs201874528 LS-SNP   dbSNP   P 186 R - > Q Turn 72% (Exposed) 4 103498185
    rs112424808 LS-SNP   dbSNP   P 202 Q - > L Helix 44% (Exposed) 4 103500074
    rs200893106 LS-SNP   dbSNP   P 215 M - > I Beta Ladder 1% (Buried) 4 103500114
    rs146936581 LS-SNP   dbSNP   P 230 R - > L Beta Ladder 50% (Exposed) 4 103500158
    rs200186183 LS-SNP   dbSNP   P 238 A - > T Beta Ladder 37% (Exposed) 4 103500181
    rs201065307 LS-SNP   dbSNP   P 325 K - > N Bend 96% (Exposed) 4 103505889
    rs143817570 LS-SNP   dbSNP   P 334 R - > Q Beta Ladder 0% (Buried) 4 103505915