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NFKB P50 HOMODIMER BOUND TO DNA
Biology and Chemistry Report
1SVC
  •   Structure Details   Hide

    Structure Keywords

    Keywords TRANSCRIPTION/DNA
    Text DNA-BINDING, TRANSCRIPTION REGULATION, ACTIVATOR, NUCLEAR PROTEIN, PHOSPHORYLATION, DNA, TRANSCRIPTION-DNA COMPLEX

    Polymeric Molecules

    Chain D
    Description DNA (5'-D(*AP*GP*AP*TP*GP*GP*GP*GP*AP*AP*TP*CP*CP*CP*CP*TP*A P*GP*A)-3') 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polydeoxyribonucleotide 
    Formula Weight 5878.9 
    Source Method synthetic  
    Chain P
    Description PROTEIN (NUCLEAR FACTOR KAPPA-B (NF-KB)) 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 41129.2 
    Source Method genetically manipulated  

    Entity Keywords

    Entity Id EC Number Fragment Mutation Text
    n/a  n/a  n/a  MUTANT C62A 
     
  •   Protein Details   Hide

    UniProtKB Information

    Chain SWS/UNP ID SWS/UNP Accession(s)
    P NFKB1_HUMAN P19838     

    Keywords and Names

    Chain(s) RCSB Name UniProtKB Name UniProtKB Keywords

     
  •   Gene Details   Hide

    Genetic Source

    Chain P
    Common Name Human
    Scientific Name Homo sapiens  
    Genus Homo


    Genome Information

    Chromosome Locus Gene ID Gene Name Symbol
    4 4q24 4790     nuclear factor of kappa light polypeptide gene enhancer in B-cells 1 NFKB1    

    Single Nucleotide Polymorphisms (from LS-SNP database)

    SNP ID LsSnp Link dbSNP Link Chain PDB position Amino acid changes Secondary structure Solvent Accessibility Chromosome Chromosome position Ligand
    rs199574943 LS-SNP   dbSNP   P 135 G - > S Beta Ladder 13% (Intermediate) 4 103488291
    rs201874528 LS-SNP   dbSNP   P 186 R - > Q Turn 72% (Exposed) 4 103498185
    rs112424808 LS-SNP   dbSNP   P 202 Q - > L Helix 44% (Exposed) 4 103500074
    rs200893106 LS-SNP   dbSNP   P 215 M - > I Beta Ladder 1% (Buried) 4 103500114
    rs146936581 LS-SNP   dbSNP   P 230 R - > L Beta Ladder 50% (Exposed) 4 103500158
    rs200186183 LS-SNP   dbSNP   P 238 A - > T Beta Ladder 37% (Exposed) 4 103500181
    rs201065307 LS-SNP   dbSNP   P 325 K - > N Bend 96% (Exposed) 4 103505889
    rs143817570 LS-SNP   dbSNP   P 334 R - > Q Beta Ladder 0% (Buried) 4 103505915