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The Crystal Structure of HGF beta-chain in Complex with the Sema Domain of the Met Receptor.
Biology and Chemistry Report
1SHY
  •   Structure Details   Hide

    Structure Keywords

    Keywords GROWTH FACTOR/GROWTH FACTOR RECEPTOR
    Text protease, sema domain, PSI domain, receptor ectodomain growth factor, GROWTH FACTOR-GROWTH FACTOR RECEPTOR COMPLEX

    Polymeric Molecules

    Chain A
    Description Hepatocyte growth factor 
    Fragment HGF beta chain 
    Mutation C604S 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 26014.3 
    Source Method genetically manipulated  
    Entity Name Scatter factor, SF, Hepatopoeitin A 
    Chain B
    Description Hepatocyte growth factor receptor 
    Fragment Met receptor Sema and PSI domain 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 62536.5 
    Source Method genetically manipulated  
    Entity Name Met proto-oncogene tyrosine kinase, c-met, HGF receptor, HGF-SF receptor 

     
  •   Protein Details   Hide

    UniProtKB Information

    Chain SWS/UNP ID SWS/UNP Accession(s)
    A HGF_HUMAN P14210     
    B MET_HUMAN A1L467     

    Keywords and Names

    Chain(s) RCSB Name UniProtKB Name UniProtKB Keywords

    EC, Associated Pathways and Catalytic Sites

    Chain(s) IUBMB KEGG BioCyc Catalytic Site(s)
    2.7.10.1        
     
  •   Gene Details   Hide

    Genetic Source

    Chain B
    Common Name Human
    Scientific Name Homo sapiens  
    Genus Homo
    Gene met
    Host Common Name Fall Armyworm
    Host Scientific Name Spodoptera frugiperda  
    Host Genus Spodoptera
    Host Cell Line Sf9
    Host Vector Type Baculovirus


    Chain A
    Common Name Human
    Scientific Name Homo sapiens  
    Genus Homo
    Gene hgf, hpta
    Host Scientific Name Escherichia coli  
    Host Genus Escherichia


    Genome Information

    Chromosome Locus Gene ID Gene Name Symbol
    7 7q21.1 3082     hepatocyte growth factor (hepapoietin A; scatter factor) HGF    
    7 7q31 4233     MET proto-oncogene, receptor tyrosine kinase MET    

    Single Nucleotide Polymorphisms (from LS-SNP database)

    SNP ID LsSnp Link dbSNP Link Chain PDB position Amino acid changes Secondary structure Solvent Accessibility Chromosome Chromosome position Ligand
    rs143262934 LS-SNP   dbSNP   A 526 E - > D Turn 49% (Exposed) 7 81336644
    rs192078086 LS-SNP   dbSNP   A 550 I - > N Coil 1% (Buried) 7 81335711
    rs201395847 LS-SNP   dbSNP   A 582 M - > I Beta Ladder 1% (Buried) 7 81335614
    rs147075806 LS-SNP   dbSNP   A 605 T - > I Coil 83% (Exposed) 7 81335013
    rs141774517 LS-SNP   dbSNP   A 611 S - > T Beta Ladder 52% (Exposed) 7 81334995
    rs145494248 LS-SNP   dbSNP   A 631 V - > M Beta Ladder 9% (Intermediate) 7 81334825
    rs202215700 LS-SNP   dbSNP   A 645 H - > R Helix 36% (Intermediate) 7 81334782
    rs150109563 LS-SNP   dbSNP   A 648 G - > R Turn 85% (Exposed) 7 81334774
    rs77651398 LS-SNP   dbSNP   B 45 N - > S Beta Ladder 71% (Exposed) 7 116339272
    rs80256822 LS-SNP   dbSNP   B 48 A - > V Coil 2% (Buried) 7 116339281
    rs200023903 LS-SNP   dbSNP   B 67 T - > I Turn 11% (Intermediate) 7 116339338
    rs202047059 LS-SNP   dbSNP   B 67 T - > A Turn 11% (Intermediate) 7 116339337
    rs199736573 LS-SNP   dbSNP   B 97 P - > A Bend 8% (Buried) 7 116339427
    rs199701987 LS-SNP   dbSNP   B 136 V - > I Bend 5% (Buried) 7 116339544
    rs35469582 LS-SNP   dbSNP   B 143 R - > Q Beta Ladder 9% (Intermediate) 7 116339566
    rs199595181 LS-SNP   dbSNP   B 148 H - > N Bend 65% (Exposed) 7 116339580
    rs56311081 LS-SNP   dbSNP   B 156 S - > L Bend 65% (Exposed) 7 116339605
    rs55985569 LS-SNP   dbSNP   B 168 E - > D Bend 61% (Exposed) 7 116339642
    rs200861145 LS-SNP   dbSNP   B 203 S - > T Coil 38% (Exposed) 7 116339745
    rs45483396 LS-SNP   dbSNP   B 211 L - > W Coil 12% (Intermediate) 7 116339770
    rs200776610 LS-SNP   dbSNP   B 222 T - > M Turn 18% (Intermediate) 7 116339803
    rs34349517 LS-SNP   dbSNP   B 238 L - > S Coil 23% (Intermediate) 7 116339851
    rs45551737 LS-SNP   dbSNP   B 239 P - > R Turn 60% (Exposed) 7 116339854
    rs201687037 LS-SNP   dbSNP   B 301 T - > A Coil 106% (Exposed) 7 116340039
    rs35225896 LS-SNP   dbSNP   B 316 I - > M Coil 5% (Buried) 7 116340086
    rs35776110 LS-SNP   dbSNP   B 320 A - > V Beta Ladder 11% (Intermediate) 7 116340097
    rs201467281 LS-SNP   dbSNP   B 323 S - > G Beta Ladder 13% (Intermediate) 7 116340105
    rs200690492 LS-SNP   dbSNP   B 340 D - > G Coil 23% (Intermediate) 7 116340157
    rs200074800 LS-SNP   dbSNP   B 347 A - > T Beta Ladder 0% (Buried) 7 116340177
    rs201191014 LS-SNP   dbSNP   B 350 K - > Q Coil 49% (Exposed) 7 116340186
    rs201274041 LS-SNP   dbSNP   B 359 R - > Q Beta Ladder 23% (Intermediate) 7 116340214
    rs77523018 LS-SNP   dbSNP   B 362 M - > T Beta Ladder 0% (Buried) 7 116340223
    rs200016433 LS-SNP   dbSNP   B 364 A - > T Beta Ladder 3% (Buried) 7 116340228
    rs33917957 LS-SNP   dbSNP   B 375 N - > S Helix 61% (Exposed) 7 116340262
    rs201628326 LS-SNP   dbSNP   B 394 H - > N Bend 81% (Exposed) 7 116340318
    rs201789039 LS-SNP   dbSNP   B 431 M - > T Turn 48% (Exposed) 7 116371813
    rs199761604 LS-SNP   dbSNP   B 435 S - > N Turn 20% (Intermediate) 7 116371825
    rs200740468 LS-SNP   dbSNP   B 436 E - > Q Turn 91% (Exposed) 7 116371827
    rs200819547 LS-SNP   dbSNP   B 449 D - > N Turn 63% (Exposed) 7 116371866
    rs45585831 LS-SNP   dbSNP   B 495 T - > I Beta Ladder 49% (Exposed) 7 116380095
    rs200283364 LS-SNP   dbSNP   B 534 P - > S 3/10 Helix 82% (Exposed) 7 116380978
    rs200218511 LS-SNP   dbSNP   B 554 G - > R Bend 107% (Exposed) 7 116381038
    rs45460604 LS-SNP   dbSNP   B 559 Q - > R Bend 81% (Exposed) 7 116381054