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Propionibacterium shermanii transcarboxylase 5S subunit bound to pyruvic acid
Biology and Chemistry Report
  •   Structure Details   Hide

    Structure Keywords

    Keywords TRANSFERASE
    Text TIM-barrel, carbamylated lysine, transcarboxylase, cobalt, pyruvic acid, TRANSFERASE

    Polymeric Molecules

    Chain A
    Description transcarboxylase 5S subunit 
    Nonstandard Linkage no 
    Nonstandard Monomers yes 
    Polymer Type polypeptide(L) 
    Formula Weight 59653.0 
    Source Method genetically manipulated  

    Ligands and Prosthetic Groups

    ID Name Chemical Formula Weight Ligand Structure
    CO  COBALT (II) ION  Co   58.93  View 
    PYR  PYRUVIC ACID  C3 H4 O3   88.06  View 
  •   Protein Details   Hide

    UniProtKB Information

    Chain SWS/UNP ID SWS/UNP Accession(s)
    A 5S_PROFR Q05618     

    Keywords and Names

    Chain(s) RCSB Name UniProtKB Name UniProtKB Keywords

    EC, Associated Pathways and Catalytic Sites

    Chain(s) IUBMB KEGG BioCyc Catalytic Site(s)        
    C: Cellular Location | F: Molecular Function | P: Biological Process
    Chain A
    GO ID   Ontology GO Term Definition
    8152   Metabolic Process  The Chemical Reactions and Pathways Including Anabolism and Catabolism by Which Living Organisms Transform Chemical Substances. Metabolic Processes Typically Transform Small Molecules But Also Include Macromolecular Processes Such As DNA Repair and Replication and Protein Synthesis and Degradation. 
    3824   Catalytic Activity  Catalysis of a Biochemical Reaction At Physiological Temperatures. in Biologically Catalyzed Reactions the Reactants Are Known As Substrates and the Catalysts Are Naturally Occurring Macromolecular Substances Known As Enzymes. Enzymes Possess Specific Binding Sites For Substrates and Are Usually Composed Wholly or Largely of Protein But RNA That Has Catalytic Activity (ribozyme) Is Often Also Regarded As Enzymatic. 
    16740   Transferase Activity  Catalysis of the Transfer of a Group E.g. a Methyl Group Glycosyl Group Acyl Group Phosphorus Containing or Other Groups From One Compound (generally Regarded As the Donor) to Another Compound (generally Regarded As the Acceptor). Transferase Is the Systematic Name For Any Enzyme of EC Class 2. 
    46872   Metal Ion Binding  Interacting Selectively and Non Covalently with Any Metal Ion. 
    47154   Methylmalonyl Coa Carboxytransferase Activity  Catalysis of the Reaction: Pyruvate + D Methylmalonyl Coa = Oxaloacetic Acid + Propionyl Coa. 

  •   Gene Details   Hide

    Genetic Source

    Chain A
    Scientific Name Propionibacterium freudenreichii subsp. shermanii  
    Genus Propionibacterium
    Species Propionibacterium Freudenreichii
    Gene 5s
    Host Scientific Name Escherichia coli  
    Host Genus Escherichia
    Host Strain Tuner(de3)placi
    Host Vector Type Plasmid
    Host Plasmid Name pETBlue-2