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Crystal structure of murine neuroglobin
Biology and Chemistry Report
1Q1F
  •   Structure Details   Hide

    Structure Keywords

    Keywords OXYGEN STORAGE/TRANSPORT
    Text globin fold, heme protein, neuroglobin, OXYGEN STORAGE-TRANSPORT COMPLEX

    Polymeric Molecules

    Chain A
    Description Neuroglobin 
    Mutation C55S, C120S 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 17024.4 
    Source Method genetically manipulated  

    Ligands and Prosthetic Groups

    ID Name Chemical Formula Weight Ligand Structure
    HEM  PROTOPORPHYRIN IX CONTAINING FE  C34 H32 Fe N4 O4   616.49  View 
     
  •   Protein Details   Hide

    UniProtKB Information

    Chain SWS/UNP ID SWS/UNP Accession(s)
    A NGB_MOUSE Q9ER97     

    Keywords and Names

    Chain(s) RCSB Name UniProtKB Name UniProtKB Keywords

    C: Cellular Location | F: Molecular Function | P: Biological Process
    Chain A
    GO ID   Ontology GO Term Definition
    6810   Transport  The Directed Movement of Substances (such As Macromolecules Small Molecules Ions) Into Out of or Within a Cell or Between Cells or Within a Multicellular Organism by Means of Some Agent Such As a Transporter or Pore. 
    6915   Apoptotic Process  A Programmed Cell Death Process Which Begins When a Cell Receives an Internal (e.g. DNA Damage) or External Signal (e.g. an Extracellular Death Ligand) and Proceeds Through a Series of Biochemical Events (signaling Pathway Phase) Which Trigger an Execution Phase. the Execution Phase Is the Last Step of an Apoptotic Process and Is Typically Characterized by Rounding Up of the Cell Retraction of Pseudopodes Reduction of Cellular Volume (pyknosis) Chromatin Condensation Nuclear Fragmentation (karyorrhexis) Plasma Membrane Blebbing and Fragmentation of the Cell Into Apoptotic Bodies. When the Execution Phase Is Completed the Cell Has Died. 
    15671   Oxygen Transport  The Directed Movement of Oxygen (o2) Into Out of or Within a Cell or Between Cells by Means of Some Agent Such As a Transporter or Pore. 
    5737   Cytoplasm  All of the Contents of a Cell Excluding the Plasma Membrane and Nucleus But Including Other Subcellular Structures. 
    5739   Mitochondrion  A Semiautonomous Self Replicating Organelle That Occurs in Varying Numbers Shapes and Sizes in the Cytoplasm of Virtually All Eukaryotic Cells. It Is Notably the Site of Tissue Respiration. 
    43204   Perikaryon  The Portion of the Cell Soma (cell Body) That Excludes the Nucleus. 
    5344   Oxygen Transporter Activity  Enables the Directed Movement of Oxygen Into Out of or Within a Cell or Between Cells. 
    5506   Iron Ion Binding  Interacting Selectively and Non Covalently with Iron (fe) Ions. 
    5515   Protein Binding  Interacting Selectively and Non Covalently with Any Protein or Protein Complex (a Complex of Two or More Proteins That May Include Other Nonprotein Molecules). 
    19825   Oxygen Binding  Interacting Selectively and Non Covalently with Oxygen (o2). 
    20037   Heme Binding  Interacting Selectively and Non Covalently with Heme Any Compound of Iron Complexed in a Porphyrin (tetrapyrrole) Ring. 
    46872   Metal Ion Binding  Interacting Selectively and Non Covalently with Any Metal Ion. 


     
  •   Gene Details   Hide

    Genetic Source

    Chain A
    Common Name House Mouse
    Scientific Name Mus musculus  
    Genus Mus
    Gene ngb
    Host Scientific Name Escherichia coli  
    Host Genus Escherichia
    Host Strain Bl21(de3)plys
    Host Vector Type Plasmid
    Host Plasmid Name PET3a


    Genome Information

    Chromosome Locus Gene ID Gene Name Symbol
    12 12|12 D3 64242     neuroglobin NGB