1PJL

Crystal structure of human m-NAD-ME in ternary complex with NAD and Lu3+


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.9 Å
  • R-Value Free: 0.263
  • R-Value Work: 0.204

Literature

Macromolecules
Sequence Display for 1PJL

Classification: OXIDOREDUCTASE

Total Structure Weight: 541813.56

Macromolecule Entities
Molecule Chains Length Organism Details
NAD-dependent malic enzyme, mitochondrial A, B, C..., D, E, F, G, HA, B, C, D, E, F, G, H 584 Homo sapiens EC#: 1.1.1.38 IUBMB
Mutation: M1M, M29M, M38M, M47M, M75M, M86M, M108M, M177M, M219M, M239M, M325M, M327M, M343M, M407M, M539M
Gene Name(s): ME2 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NAD
Query on NAD

A, B, C, D, E, F, G, H NICOTINAMIDE-ADENINE-DINUCLEOTIDE
C21 H27 N7 O14 P2
BAWFJGJZGIEFAR-NNYOXOHSSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
LU
Query on LU

A, B, C, D, E, F, G, H LUTETIUM (III) ION
LU (Synonym)
Lu
PSDMOPINLDTFSZ-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
MSE
Query on MSE
A, B, C, D, E, F, G, H L-PEPTIDE LINKING C5 H11 N O2 Se MET

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.9 Å
  • R-Value Free: 0.263
  • R-Value Work: 0.204
  • Space Group: P 1

Unit Cell:

Length (Å) Angle (°)
a = 113.30 α = 116.50
b = 119.00 β = 94.80
c = 125.90 γ = 102.80

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2003-06-03
  • Released Date: 2003-06-17
  • Deposition author(s): Yang, Z., Batra, R., Floyd, D.L., Hung, H.-C., Chang, G.-G., Tong, L.

Revision History

  • Version 1_0: 2003-06-17

    Type: Initial release

  • Version 1_1: 2008-04-29

    Type: Version format compliance

  • Version 1_2: 2011-07-13

    Type: Version format compliance

  • Version 1_3: 2017-10-11

    Type: Advisory, Refinement description