1P6D

STRUCTURE OF THE D55N MUTANT OF PHOSPHOLIPASE C FROM BACILLUS CEREUS IN COMPLEX WITH (3S)-3,4,DI-N-HEXANOYLOXYBUTYL-1-PHOSPHOCHOLINE


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.203
  • R-Value Work: 0.174

Literature

Macromolecules
Sequence Display for 1P6D

Classification: HYDROLASE

Total Structure Weight: 29070.20

Macromolecule Entities
Molecule Chains Length Organism Details
PHOSPHOLIPASE C A 245 Bacillus cereus EC#: 3.1.4.3 IUBMB
Mutation: D55N
Gene Name(s): plc
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
3PC
Query on 3PC

A (3S)-3,4-DI-N-HEXANOYLOXYBUTYL-1-PHOSPHOCHOLINE
C21 H42 N O7 P
BRTDPJPTKQNAET-IBGZPJMESA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ZN
Query on ZN

A ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
3PC N/A in BindingDB
Ki: 1150000 nM  BindingMOAD
Ki: 1150000 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.203
  • R-Value Work: 0.174
  • Space Group: P 43 21 2

Unit Cell:

Length (Å) Angle (°)
a = 89.93 α = 90.00
b = 89.93 β = 90.00
c = 73.94 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2003-04-29
  • Released Date: 2003-09-30
  • Deposition author(s): Antikainen, N.M., Monzingo, A.F., Franklin, C.L., Robertus, J.D., Martin, S.F.

Revision History

  • Version 1_0: 2003-09-30

    Type: Initial release

  • Version 1_1: 2008-04-29

    Type: Version format compliance

  • Version 1_2: 2011-07-13

    Type: Version format compliance