1P4E

Flpe W330F mutant-DNA Holliday Junction Complex


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.7 Å
  • R-Value Free: 0.275
  • R-Value Work: 0.236

Literature

Macromolecules
Sequence Display for 1P4E

Classification: DNA BINDING PROTEIN / RECOMBINATION / DNA

Total Structure Weight: 238189.89


Macromolecule Entities
Molecule Chains Length Organism Details
Recombinase FLP protein A, B 429 Saccharomyces cerevisiae Fragment: Flpe
Mutation: P2S, G5D, L33S, Y108N, S294P, W330F
Details: C-terminal (His)6 tag via a glycine linker
Gene Name(s): FLP1 R0010W
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Recombinase FLP protein C, D 429 Saccharomyces cerevisiae Fragment: Flpe
Mutation: P2S, G5D, L33S, Y108N, S294P, W330F
Details: Posttranslational modification of TYR343 to PTR. This modification is a result of covalent binding to DNA.
Gene Name(s): FLP1 R0010W
Macromolecule Entities
Molecule Chains Length Organism Details
5'-D(*TP*AP*AP*GP*TP*TP*CP*CP*TP*AP*TP*TP*C)-3' E, F 13 synthetic
5'-D(*TP*TP*TP*AP*AP*AP*AP*GP*AP*AP*TP*AP*GP*GP*AP*AP*CP*TP*TP*C)-3' I, J 20 synthetic
33-MER G, H 33 synthetic 2PO represents 3'-phosphate which attached to C13 of chain H

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
2PO
Query on 2PO

H PHOSPHONATE
H O3 P
ABLZXFCXXLZCGV-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
PTR
Query on PTR
C, D L-PEPTIDE LINKING C9 H12 N O6 P TYR

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.7 Å
  • R-Value Free: 0.275
  • R-Value Work: 0.236
  • Space Group: P 1 21 1

Unit Cell:

Length (Å) Angle (°)
a = 79.76 α = 90.00
b = 116.71 β = 97.64
c = 142.05 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2003-04-23
  • Released Date: 2003-05-20
  • Deposition author(s): Rice, P.A., Chen, Y.

Revision History

  • Version 1_0: 2003-05-20

    Type: Initial release

  • Version 1_1: 2008-04-29

    Type: Version format compliance

  • Version 1_2: 2011-07-13

    Type: Non-polymer description, Version format compliance