1P2D

Crystal Structure of Glycogen Phosphorylase B in complex with Beta Cyclodextrin


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.94 Å
  • R-Value Free: 0.218
  • R-Value Work: 0.193

Literature

Macromolecules
Sequence Display for 1P2D

Classification: TRANSFERASE

Total Structure Weight: 97898.66

Macromolecule Entities
Molecule Chains Length Organism Details
Glycogen phosphorylase, muscle form A 842 Oryctolagus cuniculus EC#: 2.4.1.1 IUBMB
Mutation: L380I
Gene Name(s): PYGM Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
PLP
Query on PLP

A PYRIDOXAL-5'-PHOSPHATE
VITAMIN B6 Phosphate (Synonym)
C8 H10 N O6 P
NGVDGCNFYWLIFO-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
GLC
Query on GLC

A ALPHA-D-GLUCOSE
C6 H12 O6
WQZGKKKJIJFFOK-DVKNGEFBSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.94 Å
  • R-Value Free: 0.218
  • R-Value Work: 0.193
  • Space Group: P 43 21 2

Unit Cell:

Length (Å) Angle (°)
a = 128.87 α = 90.00
b = 128.87 β = 90.00
c = 116.18 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2003-04-15
  • Released Date: 2003-09-02
  • Deposition author(s): Pinotsis, N., Leonidas, D.D., Chrysina, E.D., Oikonomakos, N.G., Mavridis, I.M.

Revision History

  • 2008-04-29
    Type: Version format compliance
  • 2011-07-13
    Type: Derived calculations, Version format compliance