An Information Portal to 105025 Biological Macromolecular Structures

Biology and Chemistry Report
  •   Structure Details   Hide

    Structure Keywords


    Polymeric Molecules

    Chain A
    Description Alpha-1-antitrypsin precursor 
    Fragment alpha-1-antitrypsin (RESIDUES 26-418) 
    Mutation F51L, T59A, T68A, A70G, C232S, M358R, M274I, S381A, K387R 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 44276.8 
    Source Method genetically manipulated  
    Entity Name Alpha-1 protease inhibitor, Alpha-1- antiproteinase, PRO0684/PRO2209 
    Chain B
    Description Trypsinogen, cationic precursor 
    Mutation S195A 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 25428.9 
    Source Method genetically manipulated  
    Entity Name Beta-trypsin, Fragment 

  •   Protein Details   Hide

    UniProtKB Information

    Chain SWS/UNP ID SWS/UNP Accession(s)
    A A1AT_HUMAN A6PX14     
    B TRY1_BOVIN P00760     

    Keywords and Names

    Chain(s) RCSB Name UniProtKB Name UniProtKB Keywords

    EC, Associated Pathways and Catalytic Sites

    Chain(s) IUBMB KEGG BioCyc Catalytic Site(s)        
    C: Cellular Location | F: Molecular Function | P: Biological Process
    Chain A
    GO ID   Ontology GO Term Definition
    2576   Platelet Degranulation  The Regulated Exocytosis of Secretory Granules Containing Preformed Mediators Such As Histamine and Serotonin by a Platelet. 
    6953   Acute Phase Response  An Acute Inflammatory Response That Involves Non Antibody Proteins Whose Concentrations in the Plasma Increase in Response to Infection or Injury of Homeothermic Animals. 
    7596   Blood Coagulation  The Sequential Process in Which the Multiple Coagulation Factors of the Blood Interact Ultimately Resulting in the Formation of an Insoluble Fibrin Clot; It May Be Divided Into Three Stages: Stage 1 the Formation of Intrinsic and Extrinsic Prothrombin Converting Principle; Stage 2 the Formation of Thrombin; Stage 3 the Formation of Stable Fibrin Polymers. 
    7599   Hemostasis  The Stopping of Bleeding (loss of Body Fluid) or the Arrest of the Circulation to an Organ or Part. 
    10466   Negative Regulation of Peptidase Activity  Any Process That Stops or Reduces the Rate of Peptidase Activity the Hydrolysis of Peptide Bonds Within Proteins. 
    10951   Negative Regulation of Endopeptidase Activity  Any Process That Decreases the Frequency Rate or Extent of Endopeptidase Activity the Endohydrolysis of Peptide Bonds Within Proteins. 
    30162   Regulation of Proteolysis  Any Process That Modulates the Frequency Rate or Extent of the Hydrolysis of a Peptide Bond or Bonds Within a Protein. 
    30168   Platelet Activation  A Series of Progressive Overlapping Events Triggered by Exposure of the Platelets to Subendothelial Tissue. These Events Include Shape Change Adhesiveness Aggregation and Release Reactions. When Carried Through to Completion These Events Lead to the Formation of a Stable Hemostatic Plug. 
    5576   Extracellular Region  The Space External to the Outermost Structure of a Cell. For Cells Without External Protective or External Encapsulating Structures This Refers to Space Outside of the Plasma Membrane. This Term Covers the Host Cell Environment Outside an Intracellular Parasite. 
    5578   Proteinaceous Extracellular Matrix  A Layer Consisting Mainly of Proteins (especially Collagen) and Glycosaminoglycans (mostly As Proteoglycans) That Forms a Sheet Underlying or Overlying Cells Such As Endothelial and Epithelial Cells. the Proteins Are Secreted by Cells in the Vicinity. an Example of This Component Is Found in Mus Musculus. 
    5615   Extracellular Space  That Part of a Multicellular Organism Outside the Cells Proper Usually Taken to Be Outside the Plasma Membranes and Occupied by Fluid. 
    5783   Endoplasmic Reticulum  The Irregular Network of Unit Membranes Visible Only by Electron Microscopy That Occurs in the Cytoplasm of Many Eukaryotic Cells. the Membranes Form a Complex Meshwork of Tubular Channels Which Are Often Expanded Into Slitlike Cavities Called Cisternae. the Er Takes Two Forms Rough (or Granular) with Ribosomes Adhering to the Outer Surface and Smooth (with No Ribosomes Attached). 
    5794   Golgi Apparatus  A Compound Membranous Cytoplasmic Organelle of Eukaryotic Cells Consisting of Flattened Ribosome Free Vesicles Arranged in a More or Less Regular Stack. the Golgi Apparatus Differs From the Endoplasmic Reticulum in Often Having Slightly Thicker Membranes Appearing in Sections As a Characteristic Shallow Semicircle So That the Convex Side (cis or Entry Face) Abuts the Endoplasmic Reticulum Secretory Vesicles Emerging From the Concave Side (trans or Exit Face). in Vertebrate Cells There Is Usually One Such Organelle While in Invertebrates and Plants Where They Are Known Usually As Dictyosomes There May Be Several Scattered in the Cytoplasm. the Golgi Apparatus Processes Proteins Produced On the Ribosomes of the Rough Endoplasmic Reticulum; Such Processing Includes Modification of the Core Oligosaccharides of Glycoproteins and the Sorting and Packaging of Proteins For Transport to a Variety of Cellular Locations. Three Different Regions of the Golgi Are Now Recognized Both in Terms of Structure and Function: Cis in the Vicinity of the Cis Face Trans in the Vicinity of the Trans Face and Medial Lying Between the Cis and Trans Regions. 
    31093   Platelet Alpha Granule Lumen  The Volume Enclosed by the Membrane of the Platelet Alpha Granule. 
    70062   Extracellular Vesicular Exosome  A Membrane Bounded Vesicle That Is Released Into the Extracellular Region by Fusion of the Limiting Endosomal Membrane of a Multivesicular Body with the Plasma Membrane. 
    1948   Glycoprotein Binding  Interacting Selectively and Non Covalently with a Glycoprotein a Protein That Contains Covalently Bound Glycose (monosaccharide) Residues. These Also Include Proteoglycans. 
    2020   Protease Binding  Interacting Selectively and Non Covalently with Any Protease or Peptidase. 
    4867   Serine Type Endopeptidase Inhibitor Activity  Stops Prevents or Reduces the Activity of Serine Type Endopeptidases Enzymes That Catalyze the Hydrolysis of Nonterminal Peptide Bonds in a Polypeptide Chain; a Serine Residue (and a Histidine Residue) Are At the Active Center of the Enzyme. 
    5515   Protein Binding  Interacting Selectively and Non Covalently with Any Protein or Protein Complex (a Complex of Two or More Proteins That May Include Other Nonprotein Molecules). 
    30414   Peptidase Inhibitor Activity  Stops Prevents or Reduces the Activity of a Peptidase Any Enzyme That Catalyzes the Hydrolysis Peptide Bonds. 
    42802   Identical Protein Binding  Interacting Selectively and Non Covalently with an Identical Protein or Proteins. 
    Chain B
    GO ID   Ontology GO Term Definition
    6508   Proteolysis  The Hydrolysis of Proteins Into Smaller Polypeptides And/or Amino Acids by Cleavage of Their Peptide Bonds. 
    3824   Catalytic Activity  Catalysis of a Biochemical Reaction At Physiological Temperatures. in Biologically Catalyzed Reactions the Reactants Are Known As Substrates and the Catalysts Are Naturally Occurring Macromolecular Substances Known As Enzymes. Enzymes Possess Specific Binding Sites For Substrates and Are Usually Composed Wholly or Largely of Protein But RNA That Has Catalytic Activity (ribozyme) Is Often Also Regarded As Enzymatic. 
    4252   Serine Type Endopeptidase Activity  Catalysis of the Hydrolysis of Internal Alpha Peptide Bonds in a Polypeptide Chain by a Catalytic Mechanism That Involves a Catalytic Triad Consisting of a Serine Nucleophile That Is Activated by a Proton Relay Involving an Acidic Residue (e.g. Aspartate or Glutamate) and a Basic Residue (usually Histidine). 

  •   Gene Details   Hide

    Genetic Source

    Chain B
    Common Name Cattle
    Scientific Name Bos taurus  
    Genus Bos
    Host Scientific Name Escherichia coli  
    Host Genus Escherichia
    Host Cell Line Sg13009
    Host Strain Sg13009
    Host Vector Type Plasmid
    Host Plasmid Name pQE60

    Chain A
    Common Name Human
    Scientific Name Homo sapiens  
    Genus Homo
    Tissue Blood
    Gene serpina1 or pi or aat
    Host Scientific Name Escherichia coli  
    Host Genus Escherichia
    Host Cell Line Sg13009
    Host Strain Sg13009
    Host Vector Type Plasmid
    Host Plasmid Name pQE30

    Genome Information

    Chromosome Locus Gene ID Gene Name Symbol
    4 - 780933     cationic trypsin LOC780933    
    14 14q32.1 5265     serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 1 SERPINA1    

    Single Nucleotide Polymorphisms (from LS-SNP database)

    SNP ID LsSnp Link dbSNP Link Chain PDB position Amino acid changes Secondary structure Solvent Accessibility Chromosome Chromosome position Ligand
    rs149319176 LS-SNP   dbSNP   A 34 A - > ST Helix 0% (Buried) 14 94849403
    rs28931570 LS-SNP   dbSNP   A 39 R - > C Helix 24% (Intermediate) 14 94849388
    rs28931569 LS-SNP   dbSNP   A 41 L - > P Helix 7% (Buried) 14 94849381
    rs140744031 LS-SNP   dbSNP   A 43 H - > Q Helix 73% (Exposed) 14 94849374
    rs199687431 LS-SNP   dbSNP   A 45 S - > F Coil 26% (Intermediate) 14 94849369
    rs11575873 LS-SNP   dbSNP   A 47 S - > R Bend 58% (Exposed) 14 94849364
    rs55819880 LS-SNP   dbSNP   A 53 S - > CFY Coil 0% (Buried) 14 94849345
    rs113817720 LS-SNP   dbSNP   A 58 A - > T Helix 0% (Buried) 14 94849331
    rs111850950 LS-SNP   dbSNP   A 60 A - > T Helix 0% (Buried) 14 94849325
    rs28931568 LS-SNP   dbSNP   A 67 G - > E 3/10 Helix 0% (Buried) 14 94849303
    rs199962756 LS-SNP   dbSNP   A 71 D - > E Helix 64% (Exposed) 14 94849290
    rs137888162 LS-SNP   dbSNP   A 84 L - > R Turn 27% (Intermediate) 14 94849252
    rs199422213 LS-SNP   dbSNP   A 85 T - > M Turn 88% (Exposed) 14 94849249
    rs28931572 LS-SNP   dbSNP   A 92 I - > N Helix 0% (Buried) 14 94849228
    rs709932 LS-SNP   dbSNP   A 101 R - > H Helix 46% (Exposed) 14 94849201
    rs11558261 LS-SNP   dbSNP   A 115 G - > S Beta Ladder 14% (Intermediate) 14 94849160
    rs11558263 LS-SNP   dbSNP   A 121 S - > R Beta Ladder 18% (Intermediate) 14 94849140
    rs142942004 LS-SNP   dbSNP   A 142 A - > D Beta Ladder 24% (Intermediate) 14 94849078
    rs112030253 LS-SNP   dbSNP   A 148 G - > RW Turn 79% (Exposed) 14 94849061
    rs149770048 LS-SNP   dbSNP   A 151 E - > K Helix 58% (Exposed) 14 94849052
    rs147247134 LS-SNP   dbSNP   A 161 V - > M Helix 0% (Buried) 14 94849022
    rs11558265 LS-SNP   dbSNP   A 193 K - > T Beta Ladder 13% (Intermediate) 14 94847475
    rs11558257 LS-SNP   dbSNP   A 196 R - > I Bend 30% (Intermediate) 14 94847466
    rs11558264 LS-SNP   dbSNP   A 201 K - > Q 3/10 Helix 42% (Exposed) 14 94847452
    rs199422208 LS-SNP   dbSNP   A 204 E - > K Beta Ladder 59% (Exposed) 14 94847443
    rs145410420 LS-SNP   dbSNP   A 207 D - > E Beta Ladder 37% (Exposed) 14 94847432
    rs6647 LS-SNP   dbSNP   A 213 V - > A Turn 88% (Exposed) 14 94847415
    rs72552401 LS-SNP   dbSNP   A 216 V - > M Beta Ladder 23% (Intermediate) 14 94847407
    rs28929470 LS-SNP   dbSNP   A 223 R - > C Beta Ladder 17% (Intermediate) 14 94847386
    rs8350 LS-SNP   dbSNP   A 232 C - > W Beta Ladder 15% (Intermediate) 14 94847357
    rs121912714 LS-SNP   dbSNP   A 256 D - > V Coil 31% (Intermediate) 14 94847286
    rs149537225 LS-SNP   dbSNP   A 262 H - > Y Helix 34% (Intermediate) 14 94847269
    rs17580 LS-SNP   dbSNP   A 264 E - > V Helix 5% (Buried) 14 94847262
    rs141095970 LS-SNP   dbSNP   A 269 H - > Q Helix 27% (Intermediate) 14 94847246
    rs141620200 LS-SNP   dbSNP   A 284 A - > S Beta Ladder 0% (Buried) 14 94845944
    rs55704149 LS-SNP   dbSNP   A 298 D - > Y Beta Ladder 49% (Exposed) 14 94845902
    rs190881649 LS-SNP   dbSNP   A 298 D - > E Beta Ladder 49% (Exposed) 14 94845900
    rs1802962 LS-SNP   dbSNP   A 301 S - > C Helix 49% (Exposed) 14 94845893
    rs139964603 LS-SNP   dbSNP   A 302 V - > I Helix 6% (Buried) 14 94845890
    rs190061930 LS-SNP   dbSNP   A 311 V - > I 3/10 Helix 0% (Buried) 14 94845863
    rs62652285 LS-SNP   dbSNP   A 315 G - > R Turn 76% (Exposed) 14 94845851
    rs186298255 LS-SNP   dbSNP   A 315 G - > E Turn 76% (Exposed) 14 94845850
    rs28929471 LS-SNP   dbSNP   A 317 D - > N Coil 37% (Exposed) 14 94845845
    rs201788603 LS-SNP   dbSNP   A 330 S - > F Coil 19% (Intermediate) 14 94845805
    rs200945035 LS-SNP   dbSNP   A 335 K - > E Beta Ladder 20% (Intermediate) 14 94844968
    rs1802959 LS-SNP   dbSNP   A 336 A - > T Beta Ladder 0% (Buried) 14 94844965
    rs1131139 LS-SNP   dbSNP   A 337 V - > A Beta Ladder 11% (Intermediate) 14 94844961
    rs1131154 LS-SNP   dbSNP   A 338 L - > M Beta Ladder 0% (Buried) 14 94844959
    rs201318727 LS-SNP   dbSNP   A 340 I - > V Beta Ladder 2% (Buried) 14 94844953
    rs201774333 LS-SNP   dbSNP   A 341 D - > E Coil 6% (Buried) 14 94844948
    rs143370956 LS-SNP   dbSNP   A 341 D - > N Coil 6% (Buried) 14 94844950
    rs28929474 LS-SNP   dbSNP   A 342 E - > K Bend 4% (Buried) 14 94844947
    rs12077 LS-SNP   dbSNP   A 349 G - > W Turn 50% (Exposed) 14 94844926
    rs28929473 LS-SNP   dbSNP   A 353 L - > F Coil 30% (Intermediate) 14 94844912
    rs121912713 LS-SNP   dbSNP   A 358 M - > R Bend 0% (Buried) 14 94844898
    rs12233 LS-SNP   dbSNP   A 362 P - > ST Coil 30% (Intermediate) 14 94844887
    rs121912712 LS-SNP   dbSNP   A 363 E - > K Beta Ladder 62% (Exposed) 14 94844884
    rs61761869 LS-SNP   dbSNP   A 369 P - > S Coil 18% (Intermediate) 14 94844866
    rs199422209 LS-SNP   dbSNP   A 369 P - > L Coil 18% (Intermediate) 14 94844865
    rs139972630 LS-SNP   dbSNP   A 375 I - > V Beta Ladder 5% (Buried) 14 94844848
    rs1303 LS-SNP   dbSNP   A 376 E - > D Beta Ladder 3% (Buried) 14 94844843
    rs17850837 LS-SNP   dbSNP   A 377 Q - > K Turn 22% (Intermediate) 14 94844842
    rs149800596 LS-SNP   dbSNP   A 385 M - > V Beta Ladder 1% (Buried) 14 94844818
    rs3191200 LS-SNP   dbSNP   A 392 T - > P Turn 57% (Exposed) 14 94844797
    rs200467663 LS-SNP   dbSNP   A 393 Q - > L Coil 63% (Exposed) 14 94844793