1OKJ

crystal structure of the essential E. coli YeaZ protein by MAD method using the gadolinium complex "DOTMA"


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.28 Å
  • R-Value Free: 0.257
  • R-Value Work: 0.216

Literature

Macromolecules
Sequence Display for 1OKJ

Classification: HYDROLASE

Total Structure Weight: 111696.30

Macromolecule Entities
Molecule Chains Length Organism Details
TRNA THREONYLCARBAMOYLADENOSINE BIOSYNTHESIS PROTEIN TSAB A, B, C, D 251 Escherichia coli EC#: 3.4 IUBMB
Details: GATEWAY PEPTIDE INSERTED ON THE PROTEIN SEQUENCE FOR PROTEIN EXPRESSION AND PURIFICATION
Gene Name(s): tsaB yeaZ b1807 JW1796
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
GD3
Query on GD3

A GADOLINIUM ION
Gd
RJOJUSXNYCILHH-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.28 Å
  • R-Value Free: 0.257
  • R-Value Work: 0.216
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 76.34 α = 90.00
b = 97.60 β = 90.00
c = 141.94 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2003-07-26
  • Released Date: 2004-09-16
  • Deposition author(s): Abergel, C., Jeudy, S., Claverie, J.M.

Revision History

  • 2014-02-05
    Type: Database references, Derived calculations, Non-polymer description, Other, Refinement description, Source and taxonomy, Structure summary, Version format compliance
  • 2014-07-23
    Type: Database references, Other, Structure summary