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An Information Portal to 105339 Biological Macromolecular Structures

DECAY ACCELERATING FACTOR (CD55): THE STRUCTURE OF AN INTACT HUMAN COMPLEMENT REGULATOR.
Biology and Chemistry Report
1OJV
  •   Structure Details   Hide

    Structure Keywords

    Keywords REGULATOR OF COMPLEMENT PATHWAY
    Text REGULATOR OF COMPLEMENT PATHWAY, REGULATOR OF COMPLEMENT, DECAY ACCELERATION OF C3/C5 CONVERTASES, PATHOGEN RECEPTOR, SHORT CONSENSUS REPEAT DOMAINS,

    Polymeric Molecules

    Chain A,B
    Description COMPLEMENT DECAY-ACCELERATING FACTOR 
    Fragment FOUR EXTRACELLULAR SCR DOMAINS RESIDUES 35-285 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 28174.8 
    Source Method genetically manipulated  
    Entity Name CD55, DAF 

    Ligands and Prosthetic Groups

    ID Name Chemical Formula Weight Ligand Structure
    ACT  ACETATE ION  C2 H3 O2   59.04  View 
    GOL  GLYCEROL  C3 H8 O3   92.09  View 
    SO4  SULFATE ION  O4 S   96.06  View 
     
  •   Protein Details   Hide

    UniProtKB Information

    Chain SWS/UNP ID SWS/UNP Accession(s)
    A,B DAF_HUMAN B1AP14     

    Keywords and Names

    Chain(s) RCSB Name UniProtKB Name UniProtKB Keywords

     
  •   Gene Details   Hide

    Genetic Source

    Chain A,B
    Common Name Human
    Scientific Name Homo sapiens  
    Host Scientific Name Escherichia coli  
    Description Human Sequence Expressed in E.coli.


    Genome Information

    Chromosome Locus Gene ID Gene Name Symbol
    1 1q32 1604     CD55 molecule, decay accelerating factor for complement (Cromer blood group) CD55    

    Single Nucleotide Polymorphisms (from LS-SNP database)

    SNP ID LsSnp Link dbSNP Link Chain PDB position Amino acid changes Secondary structure Solvent Accessibility Chromosome Chromosome position Ligand
    rs28371588 LS-SNP   dbSNP   A 20 R - > LP Coil 49% (Exposed) 1 207495781
    rs55726033 LS-SNP   dbSNP   A 48 I - > T Beta Ladder 30% (Intermediate) 1 207495865
    rs147474393 LS-SNP   dbSNP   A 50 L - > R Beta Ladder 43% (Exposed) 1 207495871
    rs55970992 LS-SNP   dbSNP   A 53 S - > I Turn 42% (Exposed) 1 207495880
    rs56249949 LS-SNP   dbSNP   A 53 S - > R Turn 42% (Exposed) 1 207495881
    rs199922774 LS-SNP   dbSNP   A 101 Y - > H Beta Ladder 16% (Intermediate) 1 207498014
    rs149215462 LS-SNP   dbSNP   A 130 S - > L Beta 35% (Intermediate) 1 207498973
    rs201591726 LS-SNP   dbSNP   A 134 P - > L Coil 16% (Intermediate) 1 207498985
    rs55798949 LS-SNP   dbSNP   A 155 S - > T Beta Ladder 34% (Intermediate) 1 207499047
    rs56283594 LS-SNP   dbSNP   A 167 S - > L Coil 24% (Intermediate) 1 207500114
    rs111893615 LS-SNP   dbSNP   A 180 Q - > R Beta Ladder 41% (Exposed) 1 207500153
    rs144692928 LS-SNP   dbSNP   A 184 P - > L Coil 74% (Exposed) 1 207500165
    rs60822373 LS-SNP   dbSNP   A 195 A - > P Coil 78% (Exposed) 1 207504467
    rs147483928 LS-SNP   dbSNP   A 199 I - > V Coil 13% (Intermediate) 1 207504479
    rs199705465 LS-SNP   dbSNP   A 208 R - > H Coil 50% (Exposed) 1 207504507
    rs74575286 LS-SNP   dbSNP   A 225 F - > L Coil 30% (Intermediate) 1 207504559
    rs150613728 LS-SNP   dbSNP   A 242 G - > R Beta Ladder 12% (Intermediate) 1 207504608