1OFN

Purification, crystallisation and preliminary structural studies of dTDP-4-keto-6-deoxy-glucose-5-epimerase (EvaD) from Amycolatopsis orientalis; the fourth enzyme in the dTDP-L-epivancosamine biosynthetic pathway.


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.5 Å
  • R-Value Free: 0.178
  • R-Value Work: 0.144

Literature

Macromolecules
Sequence Display for 1OFN

Classification: ISOMERASE

Total Structure Weight: 45391.77

Macromolecule Entities
Molecule Chains Length Organism Details
PCZA361.16 A, B 205 Amycolatopsis orientalis Gene Name(s):
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
GOL
Query on GOL

A, B GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.5 Å
  • R-Value Free: 0.178
  • R-Value Work: 0.144
  • Space Group: P 21 21 2

Unit Cell:

Length (Å) Angle (°)
a = 98.57 α = 90.00
b = 72.00 β = 90.00
c = 57.10 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2003-04-17
  • Released Date: 2004-04-15
  • Deposition author(s): Merkel, A.B., Naismith, J.H.

Revision History

  • Version 1_0: 2004-04-15

    Type: Initial release

  • Version 1_1: 2011-05-08

    Type: Version format compliance

  • Version 1_2: 2011-07-13

    Type: Version format compliance