1OD1

Endothiapepsin PD135,040 complex


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.37 Å
  • R-Value Observed: 0.125

Literature

Macromolecules
Sequence Display for 1OD1

Classification: HYDROLASE / HYDROLASE INHIBITOR

Total Structure Weight: 34790.91

Macromolecule Entities
Molecule Chains Length Organism Details
ENDOTHIAPEPSIN A 330 Cryphonectria parasitica EC#: 3.4.23.22 IUBMB
Gene Name(s): EAPA EPN-1
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
0QS
Query on 0QS

A N~2~-[(2R)-2-benzyl-3-(tert-butylsulfonyl)propanoyl]- N-{(1R)-1-(cyclohexylmethyl)-3,3-difluoro- 2,2-dihydroxy-4-[(2-morpholin-4-ylethyl)amino]- 4-oxobutyl}-3-(1H-imidazol-3-ium-4-yl)-L- alaninamide
040, (Synonym)
C36 H56 F2 N7 O8 S
RRJUDVVMLCYZDV-DTXPUJKBSA-O
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SO4
Query on SO4

A SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Biologically Interesting Molecules 1 Unique
ID Chains Name Type/Class 2D Diagram 3D Interactions
PRD_000361
Query on PRD_000361
A GEM-DIOL INHIBITOR PD-135.040 Peptide-like /
Inhibitor
Ligand Explorer Electron Density (JSmol) Electron Density (JSmol) Electron Density (JSmol) Electron Density (JSmol) Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.37 Å
  • R-Value Observed: 0.125
  • Space Group: P 1 21 1

Unit Cell:

Length (Å) Angle (°)
a = 53.20 α = 90.00
b = 73.25 β = 110.10
c = 45.99 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2003-02-12
  • Released Date: 2003-06-12
  • Deposition author(s): Coates, L., Erskine, P.T., Mall, S., Gill, R.S., Wood, S.P., Cooper, J.B.

Revision History

  • 2011-07-13
    Type: Atomic model, Database references, Derived calculations, Non-polymer description, Structure summary, Version format compliance
  • 2012-11-30
    Type: Other