1OBZ

Crystal structure of the complex of the PDZ tandem of syntenin with an interleukin 5 receptor alpha peptide.


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.7 Å
  • R-Value Free: 0.213
  • R-Value Work: 0.148

Literature

Macromolecules
Sequence Display for 1OBZ

Classification: CELL ADHESION

Total Structure Weight: 37212.53

Macromolecule Entities
Molecule Chains Length Organism Details
SYNTENIN 1 A, B 166 Homo sapiens Fragment: PDZ2, RESIDUES 113-273
Gene Name(s): SDCBP Gene View MDA9 SYCL
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
INTERLEUKIN 5 RECEPTOR ALPHA P 8 Homo sapiens Fragment: LAST 8 RESIDUES, RESIDUES 413-420
Gene Name(s): IL5RA Gene View IL5R
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ACT
Query on ACT

A, B ACETATE ION
C2 H3 O2
QTBSBXVTEAMEQO-UHFFFAOYSA-M
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.7 Å
  • R-Value Free: 0.213
  • R-Value Work: 0.148
  • Space Group: C 1 2 1

Unit Cell:

Length (Å) Angle (°)
a = 101.49 α = 90.00
b = 48.17 β = 120.24
c = 75.00 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2003-01-31
  • Released Date: 2003-07-11
  • Deposition author(s): Kang, B.S., Cooper, D.R., Devedjiev, Y., Derewenda, U., Derewenda, Z.S.

Revision History

  • Version 1_0: 2003-07-11

    Type: Initial release

  • Version 1_1: 2011-05-08

    Type: Version format compliance

  • Version 1_2: 2011-07-13

    Type: Version format compliance