1O84

Crystal Structure of Bacteriocin AS-48. N-DECYL-BETA-D-MALTOSIDE BOUND.


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.8 Å
  • R-Value Free: 0.256
  • R-Value Work: 0.236

Literature

Macromolecules
Sequence Display for 1O84

Classification: PEPTIDE ANTIBIOTIC

Total Structure Weight: 15412.06

Macromolecule Entities
Molecule Chains Length Organism Details
PEPTIDE ANTIBIOTIC AS-48 A, B 70 Enterococcus faecalis Details: CYCLIC PROTEIN, LINK BETWEEN M1 AND W70
Gene Name(s): as-48 as48A bacA
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 4 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
MAL
Query on MAL

A MALTOSE
C12 H22 O11
GUBGYTABKSRVRQ-ASMJPISFSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
D10
Query on D10

A DECANE
C10 H22
DIOQZVSQGTUSAI-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SO4
Query on SO4

A, B SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
GOL
Query on GOL

A GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.8 Å
  • R-Value Free: 0.256
  • R-Value Work: 0.236
  • Space Group: P 41 21 2

Unit Cell:

Length (Å) Angle (°)
a = 76.49 α = 90.00
b = 76.49 β = 90.00
c = 51.52 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2002-11-25
  • Released Date: 2003-11-20
  • Deposition author(s): Sanchez-Barrena, M.J., Martinez-Ripoll, M., Galvez, A., Valdivia, E., Maqueda, M., Cruz, V., Albert, A.

Revision History

  • 2011-05-08
    Type: Version format compliance
  • 2011-07-13
    Type: Version format compliance