1O6B

Crystal structure of phosphopantetheine adenylyltransferase with ADP


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.2 Å
  • R-Value Free: 0.275
  • R-Value Work: 0.229

Literature

Macromolecules
Sequence Display for 1O6B

Classification: TRANSFERASE

Total Structure Weight: 19940.27

Macromolecule Entities
Molecule Chains Length Organism Details
Phosphopantetheine adenylyltransferase A 169 Bacillus subtilis EC#: 2.7.7.3 IUBMB
Mutation: K79R, M100M, M118M, M119M, T120A, N139D
Gene Name(s): coaD ylbI BSU15020
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 4 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ADP
Query on ADP

A ADENOSINE-5'-DIPHOSPHATE
C10 H15 N5 O10 P2
XTWYTFMLZFPYCI-KQYNXXCUSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
PO4
Query on PO4

A PHOSPHATE ION
O4 P
NBIIXXVUZAFLBC-UHFFFAOYSA-K
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CL
Query on CL

A CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MG
Query on MG

A MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
MSE
Query on MSE
A L-PEPTIDE LINKING C5 H11 N O2 Se MET

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.2 Å
  • R-Value Free: 0.275
  • R-Value Work: 0.229
  • Space Group: P 41 3 2

Unit Cell:

Length (Å) Angle (°)
a = 115.42 α = 90.00
b = 115.42 β = 90.00
c = 115.42 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2003-11-03
  • Released Date: 2003-11-25
  • Deposition author(s): Structural GenomiX

Revision History

  • 2008-04-26
    Type: Version format compliance
  • 2011-07-13
    Type: Derived calculations, Version format compliance