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TERNARY COMPLEX OF THE DNA BINDING DOMAINS OF THE OCT1 AND SOX2 TRANSCRIPTION FACTORS WITH A 19MER OLIGONUCLEOTIDE FROM THE HOXB1 REGULATORY ELEMENT
Biology and Chemistry Report
1O4X
  •   Structure Details   Hide

    Structure Keywords

    Keywords TRANSCRIPTION/DNA
    Text OCT1, POU, POUS, POUHD, SOX2, HMG-BOX, TRANSCRIPTION FACTORS, DNA, PROTEIN-DNA COMPLEX, TRANSCRIPTION-DNA COMPLEX

    Polymeric Molecules

    Chain C
    Description 5'-D(*TP*GP*TP*CP*TP*TP*TP*GP*TP*CP*AP*TP*GP*CP*TP*AP*AP*TP*G)-3' 
    Mutation C61A 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polydeoxyribonucleotide 
    Formula Weight 5816.8 
    Source Method synthetic  
    Chain D
    Description 5'-D(*CP*AP*TP*TP*AP*GP*CP*AP*TP*GP*AP*CP*AP*AP*AP*GP*AP*CP*A)-3' 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polydeoxyribonucleotide 
    Formula Weight 5830.9 
    Source Method synthetic  
    Chain A
    Description transcription factor Oct-1 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 19081.8 
    Source Method genetically manipulated  
    Chain B
    Description Transcription factor SOX-2 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 10717.7 
    Source Method genetically manipulated  

     
  •   Protein Details   Hide

    UniProtKB Information

    Chain SWS/UNP ID SWS/UNP Accession(s)
    A PO2F1_HUMAN B1AL91     
    B SOX2_HUMAN P48431     

    Keywords and Names

    Chain(s) RCSB Name UniProtKB Name UniProtKB Keywords

     
  •   Gene Details   Hide

    Genetic Source

    Chain B
    Common Name Human
    Scientific Name Homo sapiens  
    Genus Homo
    Gene sox2
    Host Scientific Name Escherichia coli  
    Host Genus Escherichia


    Chain A
    Common Name Human
    Scientific Name Homo sapiens  
    Genus Homo
    Host Scientific Name Escherichia coli  
    Host Genus Escherichia


    Genome Information

    Chromosome Locus Gene ID Gene Name Symbol
    1 1q24.2 5451     POU class 2 homeobox 1 POU2F1    
    3 3q26.3-q27 6657     SRY (sex determining region Y)-box 2 SOX2    

    Single Nucleotide Polymorphisms (from LS-SNP database)

    SNP ID LsSnp Link dbSNP Link Chain PDB position Amino acid changes Secondary structure Solvent Accessibility Chromosome Chromosome position Ligand
    rs12030882 LS-SNP   dbSNP   A 144 E - > K Coil 62% (Exposed) 1 167368477
    rs104893806 LS-SNP   dbSNP   B 213 N - > K Coil 60% (Exposed) 3 181430286
    rs104893805 LS-SNP   dbSNP   B 241 R - > P Helix 58% (Exposed) 3 181430369
    rs104893802 LS-SNP   dbSNP   B 264 L - > P Helix 35% (Intermediate) 3 181430438