1O3S

PROTEIN-DNA RECOGNITION AND DNA DEFORMATION REVEALED IN CRYSTAL STRUCTURES OF CAP-DNA COMPLEXES


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.0 Å
  • R-Value Free: 0.308
  • R-Value Work: 0.260

Literature

Macromolecules
Sequence Display for 1O3S

Classification: GENE REGULATION / DNA

Total Structure Weight: 31142.69


Macromolecule Entities
Molecule Chains Length Organism Details
CATABOLITE GENE ACTIVATOR PROTEIN A 200 Escherichia coli Mutation: E181D
Gene Name(s): crp cap csm b3357 JW5702
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Macromolecule Entities
Molecule Chains Length Organism Details
5'-D(*AP*AP*AP*AP*AP*TP*GP*CP*GP*AP*T)-3' B 11 synthetic
5'-D(*CP*TP*AP*GP*AP*TP*CP*GP*CP*AP*TP*TP*TP*TP*T)-3' C 15 synthetic

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
CMP
Query on CMP

A ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE
CYCLIC AMP; CAMP (Synonym)
C10 H12 N5 O6 P
IVOMOUWHDPKRLL-KQYNXXCUSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.0 Å
  • R-Value Free: 0.308
  • R-Value Work: 0.260
  • Space Group: P 31 2 1

Unit Cell:

Length (Å) Angle (°)
a = 78.05 α = 90.00
b = 78.05 β = 90.00
c = 142.79 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2003-03-18
  • Released Date: 2003-04-08
  • Deposition author(s): Chen, S., Ebright, R.H., Berman, H.M.
  • Previous versions: 1DB9

Revision History

  • Version 1_0: 2003-04-08

    Type: Initial release

  • Version 1_1: 2008-04-26

    Type: Version format compliance

  • Version 1_2: 2011-07-13

    Type: Version format compliance