1NY2

Human alpha thrombin inhibited by RPPGF and hirugen


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Work: 0.202

Literature

Macromolecules
Sequence Display for 1NY2

Classification: HYDROLASE / HYDROLASE INHIBITOR

Total Structure Weight: 35813.82

Macromolecule Entities
Molecule Chains Length Organism Details
thrombin light chain 1 36 Homo sapiens EC#: 3.4.21.5 IUBMB
Fragment: light chain A
Gene Name(s): F2 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
thrombin Heavy chain 2 259 Homo sapiens EC#: 3.4.21.5 IUBMB
Fragment: heavy chain B
Gene Name(s): F2 Gene View
Hirugen 3 10 synthetic
Inhibitor peptide RPPGF 4 5 Homo sapiens Gene Name(s): KNG1 Gene View BDK KNG
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
TYS
Query on TYS
3 L-PEPTIDE LINKING C9 H11 N O6 S TYR

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Observed:
  • Space Group: P 21 21 2

Unit Cell:

Length (Å) Angle (°)
a = 79.15 α = 90.00
b = 104.97 β = 90.00
c = 45.18 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2003-02-11
  • Released Date: 2003-03-04
  • Deposition author(s): Krishnan, R., Tulinsky, A., Schmaier, A.H., Hasan, A.A., Warnock, M., Srikanth, S., Mahdi, F.

Revision History

  • Version 1_0: 2003-03-04

    Type: Initial release

  • Version 1_1: 2008-04-29

    Type: Version format compliance

  • Version 1_2: 2011-07-13

    Type: Atomic model, Database references, Derived calculations, Non-polymer description, Structure summary, Version format compliance

  • Version 1_3: 2015-03-25

    Type: Database references

  • Version 1_4: 2017-10-11

    Type: Refinement description