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Crystal Structure Analysis of the FGF10-FGFR2b Complex
Biology and Chemistry Report
1NUN
  •   Structure Details   Hide

    Structure Keywords

    Keywords HORMONE/GROWTH FACTOR/MEMBRANE PROTEIN
    Text BETA-TREFOIL FOLD, IMMUNOGLOBULIN-LIKE DOMAIN, HORMONE-GROWTH FACTOR-MEMBRANE PROTEIN COMPLEX

    Polymeric Molecules

    Chain A
    Description Fibroblast growth factor-10 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 16813.4 
    Source Method genetically manipulated  
    Entity Name FGF-10, keratinocyte growth factor receptor, K-sam protein, protein tyrosine kinase, receptor like 14, FGF receptor, bacteria-expressed kinase, fibroblast growth factor receptor BEK, tyrosylprotein kinase, hydroxyaryl-protein kinase 
    Chain B
    Description fibroblast growth factor receptor 2 isoform 2 
    Nonstandard Linkage no 
    Nonstandard Monomers yes 
    Polymer Type polypeptide(L) 
    Formula Weight 25957.8 
    Source Method genetically manipulated  

    Ligands and Prosthetic Groups

    ID Name Chemical Formula Weight Ligand Structure
    15P  POLYETHYLENE GLYCOL (N=34)  C69 H140 O35   1529.83  View 
    SO4  SULFATE ION  O4 S   96.06  View 
     
  •   Protein Details   Hide

    UniProtKB Information

    Chain SWS/UNP ID SWS/UNP Accession(s)
    A FGF10_HUMAN C7FDY0     
    B FGFR2_HUMAN B4DFC2     

    Keywords and Names

    Chain(s) RCSB Name UniProtKB Name UniProtKB Keywords

    EC, Associated Pathways and Catalytic Sites

    Chain(s) IUBMB KEGG BioCyc
    2.7.10.1      
     
  •   Gene Details   Hide

    Genetic Source

    Chain B
    Common Name Human
    Scientific Name Homo sapiens  
    Genus Homo
    Host Scientific Name Escherichia coli bl21  
    Host Genus Escherichia
    Host Species Escherichia Coli
    Host Strain Bl21
    Host Vector Type Plasmid
    Host Plasmid Name pET-28a


    Chain A
    Common Name Human
    Scientific Name Homo sapiens  
    Genus Homo
    Gene fgf10
    Host Scientific Name Escherichia coli bl21  
    Host Genus Escherichia
    Host Species Escherichia Coli
    Host Strain Bl21
    Host Vector Type Plasmid
    Host Plasmid Name pET-9c


    Genome Information

    Chromosome Locus Gene ID Gene Name Symbol
    5 5p13-p12 2255     fibroblast growth factor 10 FGF10    
    10 10q26 2263     fibroblast growth factor receptor 2 FGFR2    

    Single Nucleotide Polymorphisms (from LS-SNP database)

    SNP ID LsSnp Link dbSNP Link Chain PDB position Amino acid changes Secondary structure Solvent Accessibility Chromosome Chromosome position Ligand
    rs199689272 LS-SNP   dbSNP   A 76 D - > E Bend 1% (Buried) 5 44388557
    rs104893888 LS-SNP   dbSNP   A 80 R - > S Beta Ladder 9% (Intermediate) 5 44388545
    rs104893885 LS-SNP   dbSNP   A 106 C - > F Coil 17% (Intermediate) 5 44388468
    rs200701392 LS-SNP   dbSNP   A 107 P - > R Turn 44% (Exposed) 5 44388465
    rs145888320 LS-SNP   dbSNP   A 130 Y - > C Beta Ladder 23% (Intermediate) 5 44310569
    rs104893889 LS-SNP   dbSNP   A 138 G - > E Bend 7% (Buried) 5 44310545
    rs200885171 LS-SNP   dbSNP   A 142 G - > A Beta Ladder 11% (Intermediate) 5 44310533
    rs104893886 LS-SNP   dbSNP   A 156 I - > R Beta Ladder 10% (Intermediate) 5 44305257
    rs201342529 LS-SNP   dbSNP   A 179 A - > S Coil 0% (Buried) 5 44305189
    rs183142365 LS-SNP   dbSNP   A 188 R - > I Beta 22% (Intermediate) 5 44305161
    rs104893884 LS-SNP   dbSNP   A 193 R - > *G Coil 50% (Exposed) 5 44305147
    rs150695565 LS-SNP   dbSNP   A 204 M - > V Beta Ladder 24% (Intermediate) 5 44305114
    rs202151850 LS-SNP   dbSNP   A 206 V - > I Coil 32% (Intermediate) 5 44305108
    rs147715509 LS-SNP   dbSNP   A 207 H - > PR Coil 103% (Exposed) 5 44305104
    rs112880592 LS-SNP   dbSNP   B 158 N - > S Coil 58% (Exposed) 10 123310955
    rs146244307 LS-SNP   dbSNP   B 165 R - > Q Coil 15% (Intermediate) 10 123310934
    rs141796960 LS-SNP   dbSNP   B 178 R - > H Beta Ladder 29% (Intermediate) 10 123310895
    rs200766273 LS-SNP   dbSNP   B 182 G - > W Beta Ladder 10% (Intermediate) 10 123310884
    rs202212545 LS-SNP   dbSNP   B 184 N - > I Bend 58% (Exposed) 10 123310877
    rs755793 LS-SNP   dbSNP   B 186 M - > T Coil 73% (Exposed) 10 123310871
    rs55977237 LS-SNP   dbSNP   B 186 M - > V Coil 73% (Exposed) 10 123310872
    rs147987917 LS-SNP   dbSNP   B 190 R - > W Beta Ladder 44% (Exposed) 10 123310860
    rs146948953 LS-SNP   dbSNP   B 228 N - > I Beta Ladder 46% (Exposed) 10 123298171
    rs79184941 LS-SNP   dbSNP   B 252 S - > W Coil 36% (Exposed) 10 123279677
    rs77543610 LS-SNP   dbSNP   B 253 P - > R Coil 42% (Exposed) 10 123279674
    rs149200230 LS-SNP   dbSNP   B 255 R - > W Coil 61% (Exposed) 10 123279669
    rs121918505 LS-SNP   dbSNP   B 267 S - > P Beta Ladder 67% (Exposed) 10 123279633
    rs183250272 LS-SNP   dbSNP   B 271 G - > R Turn 40% (Exposed) 10 123279621
    rs121918497 LS-SNP   dbSNP   B 289 Q - > P Beta Ladder 21% (Intermediate) 10 123279566 15P
    rs121918499 LS-SNP   dbSNP   B 290 W - > C Beta Ladder 0% (Buried) 10 123279562
    rs121918501 LS-SNP   dbSNP   B 290 W - > GR Beta Ladder 0% (Buried) 10 123279564
    rs121918500 LS-SNP   dbSNP   B 292 K - > E Beta Ladder 14% (Intermediate) 10 123279558
    rs199937788 LS-SNP   dbSNP   B 306 L - > V Coil 65% (Exposed) 10 123279516
    rs4647921 LS-SNP   dbSNP   B 309 L - > F Beta Ladder 59% (Exposed) 10 123279507 15P
    rs121913475 LS-SNP   dbSNP   B 310 K - > R Beta Ladder 51% (Exposed) 10 123279503
    rs121918504 LS-SNP   dbSNP   B 315 A - > S Bend 0% (Buried) 10 123276974
    rs121918510 LS-SNP   dbSNP   B 321 D - > A Coil 43% (Exposed) 10 123276955
    rs121918493 LS-SNP   dbSNP   B 328 Y - > C Coil 74% (Exposed) 10 123276934
    rs199757302 LS-SNP   dbSNP   B 330 R - > Q Coil 0% (Buried) 10 123276928
    rs200204947 LS-SNP   dbSNP   B 330 R - > W Coil 0% (Buried) 10 123276929
    rs121918489 LS-SNP   dbSNP   B 340 Y - > H Beta Ladder 0% (Buried) 10 123276899
    rs121918495 LS-SNP   dbSNP   B 341 T - > P Beta Ladder 37% (Exposed) 10 123276896 15P
    rs121918496 LS-SNP   dbSNP   B 342 C - > W Beta Ladder 0% (Buried) 10 123276891
    rs121918487 LS-SNP   dbSNP   B 342 C - > Y Beta Ladder 0% (Buried) 10 123276892
    rs121918488 LS-SNP   dbSNP   B 342 C - > RS Beta Ladder 0% (Buried) 10 123276893
    rs121918492 LS-SNP   dbSNP   B 344 A - > G Coil 3% (Buried) 10 123276886
    rs121918494 LS-SNP   dbSNP   B 347 S - > C Coil 27% (Intermediate) 10 123276877
    rs121918502 LS-SNP   dbSNP   B 351 S - > C Beta Ladder 33% (Intermediate) 10 123276865
    rs121918490 LS-SNP   dbSNP   B 354 S - > C Beta Ladder 51% (Exposed) 10 123276856