1ND1

Amino acid sequence and crystal structure of BaP1, a metalloproteinase from Bothrops asper snake venom that exerts multiple tissue-damaging activities.


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.93 Å
  • R-Value Free: 0.216
  • R-Value Work: 0.191

Literature

Macromolecules
Sequence Display for 1ND1

Classification: TOXIN

Total Structure Weight: 22813.09

Macromolecule Entities
Molecule Chains Length Organism Details
BaP1 A 202 Bothrops asper EC#: 3.4.24 IUBMB
Gene Name(s):
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ZN
Query on ZN

A ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
PCA
Query on PCA
A L-PEPTIDE LINKING C5 H7 N O3 GLU

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.93 Å
  • R-Value Free: 0.216
  • R-Value Work: 0.191
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 38.42 α = 90.00
b = 60.36 β = 90.00
c = 86.26 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2002-12-06
  • Released Date: 2003-11-04
  • Deposition author(s): Watanabe, L., Shannon, J.D., Valente, R.H., Rucavado, A., Alape-Giron, A., Kamiguti, A.S., Theakston, R.D., Fox, J.W., Gutierrez, J.M., Arni, R.K.

Revision History

  • Version 1_0: 2003-11-04

    Type: Initial release

  • Version 1_1: 2008-04-28

    Type: Version format compliance

  • Version 1_2: 2011-07-13

    Type: Version format compliance