1N9A

Farnesyltransferase complex with tetrahydropyridine inhibitors


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.2 Å
  • R-Value Free: 0.375
  • R-Value Work: 0.329

Literature

Macromolecules
Sequence Display for 1N9A

Classification: TRANSFERASE

Total Structure Weight: 83824.45

Macromolecule Entities
Molecule Chains Length Organism Details
Protein farnesyltransferase alpha subunit A 315 Rattus norvegicus EC#: 2.5.1.58 IUBMB 2.5.1.59 IUBMB
Fragment: residue 55-369
Mutation: I156T
Gene Name(s): Fnta
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Protein farnesyltransferase beta subunit B 402 Rattus norvegicus EC#: 2.5.1.58 IUBMB
Fragment: residue 22-423
Gene Name(s): Fntb
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
FTI
Query on FTI

B 1-{2-[3-(4-CYANO-BENZYL)-3H-IMIDAZOL-4-YL]- ACETYL}-5-NAPHTHALEN-1-YL-1,2,3,6-TETRAHYDRO- PYRIDINE-4-CARBONITRILE
C29 H23 N5 O
KXPIURLUHSBSHE-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
HFP
Query on HFP

B ALPHA-HYDROXYFARNESYLPHOSPHONIC ACID
C15 H33 O4 P
IJNCEETVCWDDQB-KFWWJZLASA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ZN
Query on ZN

B ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
FTI EC50: 3.9 nM (99) BindingDB

N/A in BindingMoad
IC50: 2.2 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.2 Å
  • R-Value Free: 0.375
  • R-Value Work: 0.329
  • Space Group: P 61

Unit Cell:

Length (Å) Angle (°)
a = 170.50 α = 90.00
b = 170.50 β = 90.00
c = 69.27 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2002-11-22
  • Released Date: 2003-01-07
  • Deposition author(s): Gwaltney II, S.L., O'Conner, S.J., Nelson, L.T., Sullivan, G.M., Imade, H., Wang, W., Hasvold, L., Li, Q., Cohen, J., Gu, W.Z.

Revision History

  • Version 1_0: 2003-01-07

    Type: Initial release

  • Version 1_1: 2008-04-28

    Type: Version format compliance

  • Version 1_2: 2011-07-13

    Type: Version format compliance