1N5Y

HIV-1 Reverse Transcriptase Crosslinked to Post-Translocation AZTMP-Terminated DNA (Complex P)


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.1 Å
  • R-Value Free: 0.285
  • R-Value Work: 0.255

Literature

Macromolecules
Sequence Display for 1N5Y

Classification: TRANSFERASE / IMMUNE SYSTEM / DNA

Total Structure Weight: 176776.84


Macromolecule Entities
Molecule Chains Length Organism Details
REVERSE TRANSCRIPTASE A 558 Human immunodeficiency virus 1 EC#: 2.7.7.49 IUBMB
Mutation: Q258C, C280S
Details: p66
Gene Name(s): gag-pol
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
REVERSE TRANSCRIPTASE B 430 Human immunodeficiency virus 1 EC#: 2.7.7.49 IUBMB
Mutation: C280S
Details: p51
Gene Name(s): gag-pol
monoclonal antibody (light chain) L 211 Mus musculus Fragment: FAB 28
Gene Name(s):
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
monoclonal antibody (heavy chain) H 225 Mus musculus Fragment: FAB 28
Gene Name(s): Ighg1 Igh-4
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Macromolecule Entities
Molecule Chains Length Organism Details
5'-D(*AP*TP*GP*C*TP*AP*GP*GP*CP*GP*CP*CP*CP*GP*AP*AP*CP*AP*GP*GP*GP*AP*CP*TP*GP*TP*G)-3' T 27 synthetic DNA TEMPLATE
5'-D(*A*CP*AP*GP*TP*CP*CP*CP*TP*GP*TP*TP*CP*GP*GP*(MRG)P*CP*GP*CP*CP*(ATM))-3' P 21 synthetic DNA PRIMER

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
MG
Query on MG

A MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 2 Unique
ID Chains Type Formula 2D Diagram Parent
MRG
Query on MRG
P DNA LINKING C13 H20 N5 O7 P S DG
ATM
Query on ATM
P DNA LINKING C10 H14 N5 O7 P DT

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.1 Å
  • R-Value Free: 0.285
  • R-Value Work: 0.255
  • Space Group: P 32 1 2

Unit Cell:

Length (Å) Angle (°)
a = 166.70 α = 90.00
b = 166.70 β = 90.00
c = 221.12 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2002-11-07
  • Released Date: 2003-01-28
  • Deposition author(s): Sarafianos, S.G., Clark Jr., A.D., Das, K., Tuske, S., Birktoft, J.J., Ilankumaran, P., Ramesha, A.R., Sayer, J.M., Jerina, D.M., Boyer, P.L., Hughes, S.H., Arnold, E.

Revision History

  • 2008-04-28
    Type: Version format compliance
  • 2011-07-13
    Type: Version format compliance