1MPA

BACTERICIDAL ANTIBODY AGAINST NEISSERIA MENINGITIDIS


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.6 Å
  • R-Value Free: 0.309
  • R-Value Work: 0.194

Literature

Macromolecules
Sequence Display for 1MPA

Classification: COMPLEX (IMMUNOGLOBULIN / PEPTIDE)

Total Structure Weight: 50104.13

Macromolecule Entities
Molecule Chains Length Organism Details
MN12H2 IGG2A-KAPPA L 219 Mus musculus Fragment: FAB FRAGMENT
Mutation: V2I, L3V, Q18K, S28A, I29L, T32S, E39H, Y91F, Y92F, F94S, G96S, S97T
Gene Name(s): Igkc Igk-C
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
MN12H2 IGG2A-KAPPA H 225 Mus musculus Fragment: FAB FRAGMENT
Mutation: P9T, E10V, V12A, K19R, I20M, T28S, D31S, Y33W, I34L, V37I, E43Q, W50G, S55N, G56R, N57D, K59R, N61T, E62Q, K63R, G66D, T69K, V72A, D73V, S76A, S77N, Q82E, S88N, F95Y, A101F, R102D, G103Y, G104A, K105D, A107I, S116T
Gene Name(s): Ighg
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
PORA P1.16 PEPTIDE FLUORESCEIN CONJUGATE P 9 synthetic Fragment: APEX OF EXTRACELLULAR LOOP 4 (VR2) OF PORA, RESIDUES 180 - 187

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
CD
Query on CD

L CADMIUM ION
Cd
WLZRMCYVCSSEQC-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 2 Unique
ID Chains Type Formula 2D Diagram Parent
THC
Query on THC
P L-PEPTIDE LINKING C6 H11 N O4 THR
CYF
Query on CYF
P L-PEPTIDE LINKING C25 H23 N3 O7 S CYS

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.6 Å
  • R-Value Free: 0.309
  • R-Value Work: 0.194
  • Space Group: P 1 21 1

Unit Cell:

Length (Å) Angle (°)
a = 55.68 α = 90.00
b = 69.10 β = 112.01
c = 72.95 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 1997-02-26
  • Released Date: 1997-09-04
  • Deposition author(s): Van Den Elsen, J.M.H., Herron, J.N., Kroon, J., Gros, P.

Revision History

  • 2008-03-03
    Type: Version format compliance
  • 2011-07-13
    Type: Version format compliance