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Crystal Structure of Human Epidermal Growth Factor Receptor (residues 1-501) in complex with TGF-alpha
Biology and Chemistry Report
1MOX
  •   Structure Details   Hide

    Structure Keywords

    Keywords transferase/growth factor
    Text EGFR, Receptor, Complex, Growth Factor, transferase-growth factor COMPLEX

    Polymeric Molecules

    Chain A,B
    Description Epidermal Growth Factor Receptor 
    Fragment Extracellular Fragment 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 55693.8 
    Source Method genetically manipulated  
    Chain C,D
    Description Transforming Growth Factor alpha 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 5560.3 
    Source Method genetically manipulated  

    Ligands and Prosthetic Groups

    ID Name Chemical Formula Weight Ligand Structure
    BMA  BETA-D-MANNOSE  C6 H12 O6   180.16  View 
    CD  CADMIUM ION  Cd   112.41  View 
    CL  CHLORIDE ION  Cl   35.45  View 
    FUC  ALPHA-L-FUCOSE  C6 H12 O5   164.16  View 
    MAN  ALPHA-D-MANNOSE  C6 H12 O6   180.16  View 
    NAG  N-ACETYL-D-GLUCOSAMINE  C8 H15 N O6   221.21  View 
    PT  PLATINUM (II) ION  Pt   195.08  View 
     
  •   Protein Details   Hide

    UniProtKB Information

    Chain SWS/UNP ID SWS/UNP Accession(s)
    A,B EGFR_HUMAN O00688     
    C,D TGFA_HUMAN P01135     

    Keywords and Names

    Chain(s) RCSB Name UniProtKB Name UniProtKB Keywords

    EC, Associated Pathways and Catalytic Sites

    Chain(s) IUBMB KEGG BioCyc
    A B  2.7.10.1      
     
  •   Gene Details   Hide

    Genetic Source

    Chain C,D
    Common Name Human
    Scientific Name Homo sapiens  
    Genus Homo
    Gene tgfa
    Host Scientific Name Escherichia coli  
    Host Genus Escherichia


    Chain A,B
    Common Name Human
    Scientific Name Homo sapiens  
    Genus Homo
    Gene egfr
    Host Common Name Chinese Hamster
    Host Scientific Name Cricetulus griseus  
    Host Genus Cricetulus
    Host Cell Line Lec8


    Genome Information

    Chromosome Locus Gene ID Gene Name Symbol
    2 2p13 7039     transforming growth factor, alpha TGFA    
    7 7p12 1956     epidermal growth factor receptor EGFR    

    Single Nucleotide Polymorphisms (from LS-SNP database)

    SNP ID LsSnp Link dbSNP Link Chain PDB position Amino acid changes Secondary structure Solvent Accessibility Chromosome Chromosome position Ligand
    rs75250328 LS-SNP   dbSNP   A 3 E - > GR Coil 94% (Exposed) 7 55177642
    rs144158123 LS-SNP   dbSNP   A 10 T - > R Beta 18% (Intermediate) 7 55209991
    rs147740818 LS-SNP   dbSNP   A 19 T - > A Bend 54% (Exposed) 7 55210017
    rs142061256 LS-SNP   dbSNP   A 66 L - > H Beta Ladder 0% (Buried) 7 55211026
    rs35515689 LS-SNP   dbSNP   A 71 T - > P Coil 6% (Buried) 7 55211040
    rs17289589 LS-SNP   dbSNP   A 74 R - > Q Beta 29% (Intermediate) 7 55211050
    rs145113601 LS-SNP   dbSNP   A 85 G - > A Coil 4% (Buried) 7 55211083
    rs150234987 LS-SNP   dbSNP   A 121 H - > R Bend 50% (Exposed) 7 55214308
    rs200664836 LS-SNP   dbSNP   A 220 R - > Q Bend 74% (Exposed) 7 55220341
    rs138847501 LS-SNP   dbSNP   A 233 E - > K Turn 31% (Intermediate) 7 55221725
    rs17336639 LS-SNP   dbSNP   A 242 P - > R Coil 49% (Exposed) 7 55221753
    rs199796955 LS-SNP   dbSNP   A 258 E - > K Turn 79% (Exposed) 7 55221800
    rs149840192 LS-SNP   dbSNP   A 265 A - > V Turn 38% (Exposed) 7 55221822
    rs150549265 LS-SNP   dbSNP   A 268 V - > M Beta Ladder 17% (Intermediate) 7 55221830
    rs149321481 LS-SNP   dbSNP   A 289 A - > V Bend 87% (Exposed) 7 55223571
    rs144460286 LS-SNP   dbSNP   A 304 K - > Q Coil 70% (Exposed) 7 55223615
    rs144997037 LS-SNP   dbSNP   A 312 V - > M Beta Ladder 51% (Exposed) 7 55223639
    rs201364864 LS-SNP   dbSNP   A 402 I - > V Beta Ladder 0% (Buried) 7 55225424
    rs146711874 LS-SNP   dbSNP   A 434 D - > E Bend 20% (Intermediate) 7 55227907
    rs200592648 LS-SNP   dbSNP   A 437 V - > A Beta Ladder 0% (Buried) 7 55227915
    rs116057045 LS-SNP   dbSNP   A 495 E - > D Bend 44% (Exposed) 7 55229250 CD,CL
    rs2227983 LS-SNP   dbSNP   A 497 R - > KMT 3/10 Helix 57% (Exposed) 7 55229255
    rs148679837 LS-SNP   dbSNP   C 39 V - > I Beta Ladder 17% (Intermediate) 2 70683604