1M64

Crystal structure of Q363F mutant flavocytochrome c3


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.224
  • R-Value Work: 0.163

Literature

Macromolecules
Sequence Display for 1M64

Classification: OXIDOREDUCTASE

Total Structure Weight: 128073.70

Macromolecule Entities
Molecule Chains Length Organism Details
flavocytochrome c3 A, B 571 Shewanella frigidimarina EC#: 1.3.5.4 IUBMB
Mutation: Q363F
Gene Name(s): fccA fcc3
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 4 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
FAD
Query on FAD

A, B FLAVIN-ADENINE DINUCLEOTIDE
C27 H33 N9 O15 P2
VWWQXMAJTJZDQX-UYBVJOGSSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
HEM
Query on HEM

A, B PROTOPORPHYRIN IX CONTAINING FE
HEME (Synonym)
C34 H32 Fe N4 O4
KABFMIBPWCXCRK-RGGAHWMASA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
FUM
Query on FUM

A, B FUMARIC ACID
C4 H4 O4
VZCYOOQTPOCHFL-OWOJBTEDSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
NA
Query on NA

A, B SODIUM ION
Na
FKNQFGJONOIPTF-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.224
  • R-Value Work: 0.163
  • Space Group: P 1 21 1

Unit Cell:

Length (Å) Angle (°)
a = 78.52 α = 90.00
b = 88.89 β = 104.42
c = 91.19 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2002-07-12
  • Released Date: 2002-11-06
  • Deposition author(s): Mowat, C.G., Pankhurst, K.L., Miles, C.S., Leys, D., Walkinshaw, M.D., Reid, G.A., Chapman, S.K.

Revision History

  • Version 1_0: 2002-11-06

    Type: Initial release

  • Version 1_1: 2008-04-28

    Type: Version format compliance

  • Version 1_2: 2011-07-13

    Type: Version format compliance