Macromolecules
Sequence Display for 1LYW

Classification: ASPARTIC PROTEASE

Total Structure Weight: 148789.81

Macromolecule Entities
Molecule Chains Length Organism Details
CATHEPSIN D A, C, E, G 97 Homo sapiens EC#: 3.4.23.5 IUBMB
Gene Name(s): CTSD Gene View CPSD
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
CATHEPSIN D B, D, F, H 241 Homo sapiens EC#: 3.4.23.5 IUBMB
Gene Name(s): CTSD Gene View CPSD

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
EPE
Query on EPE

A, C, E, G 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID
HEPES (Synonym)
C8 H18 N2 O4 S
JKMHFZQWWAIEOD-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.257
  • R-Value Work: 0.195
  • Space Group: P 21 21 2

Unit Cell:

Length (Å) Angle (°)
a = 140.26 α = 90.00
b = 136.80 β = 90.00
c = 140.42 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 1998-06-30
  • Released Date: 1999-07-22
  • Deposition author(s): Lee, A.Y., Gulnik, S.V., Erickson, J.W.

Revision History

  • 2008-03-03
    Type: Version format compliance
  • 2011-07-13
    Type: Version format compliance