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CRYSTAL STRUCTURE OF FXA IN COMPLEX WITH 41.
Biology and Chemistry Report
1LPZ
  •   Structure Details   Hide

    Structure Keywords

    Keywords HYDROLASE
    Text Protein inhibitor complex, blood coagulation factor, serine proteinase, HYDROLASE

    Polymeric Molecules

    Chain A
    Description Blood coagulation factor Xa 
    Fragment light chain 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 15210.9 
    Source Method natural source  
    Chain B
    Description Blood coagulation factor Xa 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 28550.8 
    Source Method natural source  

    Ligands and Prosthetic Groups

    ID Name Chemical Formula Weight Ligand Structure
    CA  CALCIUM ION  Ca   40.08  View 
    CMB  1-(3-carbamimidoylbenzyl)-N-(3,5-dichlorobenzyl)-4-methyl-1H-indole-2-carboxamide  C25 H22 Cl2 N4 O   465.37  View 
     
  •   Protein Details   Hide

    UniProtKB Information

    Chain SWS/UNP ID SWS/UNP Accession(s)
    A FA10_HUMAN P00742     
    B FA10_HUMAN P00742     

    Keywords and Names

    Chain(s) RCSB Name UniProtKB Name UniProtKB Keywords

    EC, Associated Pathways and Catalytic Sites

    Chain(s) IUBMB KEGG BioCyc Catalytic Site(s)
    3.4.21.6        
    3.4.21.6        

    Protein Analyses

    Measured Binding Affinities   

     
  •   Gene Details   Hide

    Natural Source

    Chain B
    Common Name Human
    Scientific Name Homo sapiens  
    Genus Homo
    Chain A
    Common Name Human
    Scientific Name Homo sapiens  
    Genus Homo

    Genome Information

    Chromosome Locus Gene ID Gene Name Symbol
    13 13q34 2159     coagulation factor X F10    

    Single Nucleotide Polymorphisms (from LS-SNP database)

    SNP ID LsSnp Link dbSNP Link Chain PDB position Amino acid changes Secondary structure Solvent Accessibility Chromosome Chromosome position Ligand
    rs137951545 LS-SNP   dbSNP   A 11 C - > Y Coil 4% (Buried) 13 113795269
    rs61753266 LS-SNP   dbSNP   A 17 E - > K Bend 66% (Exposed) 13 113795286
    rs3211772 LS-SNP   dbSNP   A 27 A - > T Beta Ladder 9% (Intermediate) 13 113795316
    rs138587138 LS-SNP   dbSNP   A 28 R - > C Beta Ladder 49% (Exposed) 13 113795319
    rs149285827 LS-SNP   dbSNP   A 29 G - > R Beta Ladder 46% (Exposed) 13 113795322
    rs144616884 LS-SNP   dbSNP   A 34 D - > N Bend 39% (Exposed) 13 113795337