1KO3

VIM-2, a Zn-beta-lactamase from Pseudomonas aeruginosa with Cys221 reduced


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.91 Å
  • R-Value Free: 0.250
  • R-Value Work: 0.209

Literature

Macromolecules
Sequence Display for 1KO3

Classification: HYDROLASE

Total Structure Weight: 24889.02

Macromolecule Entities
Molecule Chains Length Organism Details
VIM-2 metallo-beta-lactamase A 230 Pseudomonas aeruginosa EC#: 3.5.2.6 IUBMB
Fragment: residues 30-295
Gene Name(s): blaVIM-2 bla vim-2 bla-VIM-2 blasVIM-2 blaVIM2 blm VIM-2 vim-2 PAERUG_P32_London_17_VIM_2_10_11_06255
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 4 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ZN
Query on ZN

A ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ACT
Query on ACT

A ACETATE ION
C2 H3 O2
QTBSBXVTEAMEQO-UHFFFAOYSA-M
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CL
Query on CL

A CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
OH
Query on OH

A HYDROXIDE ION
H O
XLYOFNOQVPJJNP-UHFFFAOYSA-M
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.91 Å
  • R-Value Free: 0.250
  • R-Value Work: 0.209
  • Space Group: I 2 2 2

Unit Cell:

Length (Å) Angle (°)
a = 67.81 α = 90.00
b = 78.04 β = 90.00
c = 79.65 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2001-12-20
  • Released Date: 2003-09-02
  • Deposition author(s): Garcia-Saez, I., Docquier, J.-D., Rossolini, G.M., Dideberg, O.

Revision History

  • Version 1_0: 2003-09-02

    Type: Initial release

  • Version 1_1: 2008-01-07

    Type: Version format compliance

  • Version 1_2: 2011-07-13

    Type: Version format compliance