1KGT

Crystal Structure of Tetrahydrodipicolinate N-Succinyltransferase in Complex with Pimelate and Succinyl-CoA


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Free: 0.261
  • R-Value Work: 0.168

Literature

Macromolecules
Sequence Display for 1KGT

Classification: TRANSFERASE

Total Structure Weight: 30946.77

Macromolecule Entities
Molecule Chains Length Organism Details
2,3,4,5-TETRAHYDROPYRIDINE-2-CARBOXYLATE N-SUCCINYLTRANSFERASE A 274 Mycobacterium bovis EC#: 2.3.1.117 IUBMB
Gene Name(s): dapD
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
SCA
Query on SCA

A SUCCINYL-COENZYME A
C25 H40 N7 O19 P3 S
VNOYUJKHFWYWIR-ITIYDSSPSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
PML
Query on PML

A PIMELIC ACID
C7 H12 O4
WLJVNTCWHIRURA-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Free: 0.261
  • R-Value Work: 0.168
  • Space Group: H 3

Unit Cell:

Length (Å) Angle (°)
a = 95.98 α = 90.00
b = 95.98 β = 90.00
c = 73.44 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2001-11-28
  • Released Date: 2002-04-03
  • Deposition author(s): Beaman, T.W., Vogel, K.W., Drueckhammer, D.G., Blanchard, J.S., Roderick, S.L.

Revision History

  • Version 1_0: 2002-04-03

    Type: Initial release

  • Version 1_1: 2008-04-27

    Type: Version format compliance

  • Version 1_2: 2011-07-13

    Type: Derived calculations, Version format compliance