1K5M

Crystal Structure of a Human Rhinovirus Type 14:Human Immunodeficiency Virus Type 1 V3 Loop Chimeric Virus MN-III-2


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.7 Å
  • R-Value Work: 0.216

Literature

Macromolecules
Sequence Display for 1K5M

Classification: VIRUS

Total Structure Weight: 1445666.50

Macromolecule Entities
Molecule Chains Length Organism Details
COAT PROTEIN VP1 (P1D) A 289 Rhinovirus b Gene Name(s):
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
CHIMERA OF HRV14 COAT PROTEIN VP2 (P1B) AND the V3 loop of HIV-1 gp120 B 277 Human immunodeficiency virus 1 Rhinovirus b Details: THE CHIMERA CONSISTS OF THE HRV14 COAT PROTEIN VP2 (P1B) AND RESIDUES 314-325 OF HIV-1 gp120.
Gene Name(s): env
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
COAT PROTEIN VP3 (P1C) C 236 Rhinovirus b Gene Name(s):
COAT PROTEIN VP4 (P1A) D 68 Rhinovirus b Gene Name(s):

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
SPH
Query on SPH

A SPHINGOSINE
C18 H37 N O2
WWUZIQQURGPMPG-MSOLQXFVSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.7 Å
  • R-Value Observed:
  • Space Group: I 2 2 2

Unit Cell:

Length (Å) Angle (°)
a = 318.90 α = 90.00
b = 349.30 β = 90.00
c = 368.40 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2001-10-11
  • Released Date: 2002-07-17
  • Deposition author(s): Ding, J., Smith, A.D., Geisler, S.C., Ma, X., Arnold, G.F., Arnold, E.

Revision History

  • 2008-04-27
    Type: Version format compliance
  • 2011-07-13
    Type: Version format compliance
  • 2017-08-02
    Type: Data collection, Refinement description, Source and taxonomy