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VHS Domain of human GGA1 complexed with cation-independent M6PR C-terminal Peptide
Biology and Chemistry Report
1JWG
  •   Structure Details   Hide

    Structure Keywords

    Keywords PROTEIN TRANSPORT/PROTEIN BINDING
    Text SUPER HELIX, PROTEIN-PEPTIDE COMPLEX, PROTEIN TRANSPORT-PROTEIN BINDING COMPLEX

    Polymeric Molecules

    Chain A,B
    Description ADP-ribosylation factor binding protein GGA1 
    Fragment VHS DOMAIN(N-terminal domain) 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 16814.6 
    Source Method genetically manipulated  
    Chain C,D
    Description Cation-independent mannose-6-phosphate receptor 
    Fragment C-terminal fragment 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 1544.6 
    Source Method synthetic  
    Entity Name M6PR 

    Ligands and Prosthetic Groups

    ID Name Chemical Formula Weight Ligand Structure
    IOD  IODIDE ION  I   126.90  View 
     
  •   Protein Details   Hide

    UniProtKB Information

    Chain SWS/UNP ID SWS/UNP Accession(s)
    A,B GGA1_HUMAN A8K3D3     
    C,D MPRI_HUMAN P11717     

    Keywords and Names

    Chain(s) RCSB Name UniProtKB Name UniProtKB Keywords

     
  •   Gene Details   Hide

    Genetic Source

    Chain A,B
    Common Name Human
    Scientific Name Homo sapiens  
    Genus Homo
    Host Scientific Name Escherichia coli  
    Host Genus Escherichia
    Host Vector Type Plasmid
    Host Plasmid Name pgex4t-2


    Genome Information

    Chromosome Locus Gene ID Gene Name Symbol
    6 6q26 3482     insulin-like growth factor 2 receptor IGF2R    
    22 22q13.31 26088     golgi-associated, gamma adaptin ear containing, ARF binding protein 1 GGA1    

    Single Nucleotide Polymorphisms (from LS-SNP database)

    SNP ID LsSnp Link dbSNP Link Chain PDB position Amino acid changes Secondary structure Solvent Accessibility Chromosome Chromosome position Ligand
    rs151193060 LS-SNP   dbSNP   A 35 E - > K Helix 46% (Exposed) 22 38010256
    rs11543985 LS-SNP   dbSNP   A 119 L - > IV Helix 1% (Buried) 22 38016296
    rs13057290 LS-SNP   dbSNP   A 130 V - > L Helix 70% (Exposed) 22 38016329
    rs148782175 LS-SNP   dbSNP   A 138 M - > I Helix 17% (Intermediate) 22 38016355
    rs146936287 LS-SNP   dbSNP   A 145 V - > I Coil 15% (Intermediate) 22 38016825
    rs199984681 LS-SNP   dbSNP   A 146 K - > N Coil 86% (Exposed) 22 38016830