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Crystal Structure of human GGA1 VHS domain.
Biology and Chemistry Report
  •   Structure Details   Hide

    Structure Keywords

    Text Super Helix, PROTEIN TRANSPORT

    Polymeric Molecules

    Chain A
    Description ADP-ribosylation factor binding protein GGA1 
    Fragment VHS DOMAIN(N-terminal domain) 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 16814.6 
    Source Method genetically manipulated  

  •   Protein Details   Hide

    UniProtKB Information

    Chain SWS/UNP ID SWS/UNP Accession(s)
    A GGA1_HUMAN Q9UJY5     

    C: Cellular Location | F: Molecular Function | P: Biological Process
    Chain A
    GO ID   Ontology GO Term Definition
    6886   Intracellular Protein Transport  The Directed Movement of Proteins in a Cell Including the Movement of Proteins Between Specific Compartments or Structures Within a Cell Such As Organelles of a Eukaryotic Cell. 

  •   Gene Details   Hide

    Genetic Source

    Chain A
    Common Name Human
    Scientific Name Homo sapiens  
    Genus Homo
    Host Scientific Name Escherichia coli  
    Host Genus Escherichia
    Host Vector Type Plasmid
    Host Plasmid Name pgex4t-2

    Genome Information

    Chromosome Locus Gene ID Gene Name Symbol
    22 22q13.31 26088     golgi-associated, gamma adaptin ear containing, ARF binding protein 1 GGA1    

    Single Nucleotide Polymorphisms (from LS-SNP database)

    SNP ID LsSnp Link dbSNP Link Chain PDB position Amino acid changes Secondary structure Solvent Accessibility Chromosome Chromosome position Ligand
    rs151193060 LS-SNP   dbSNP   A 35 E - > K Helix 63% (Exposed) 22 38010256
    rs11543985 LS-SNP   dbSNP   A 119 L - > IV Helix 1% (Buried) 22 38016296
    rs13057290 LS-SNP   dbSNP   A 130 V - > L Helix 62% (Exposed) 22 38016329
    rs148782175 LS-SNP   dbSNP   A 138 M - > I Helix 36% (Intermediate) 22 38016355
    rs146936287 LS-SNP   dbSNP   A 145 V - > I Coil 48% (Exposed) 22 38016825