1JML

Conversion of Monomeric Protein L to an Obligate Dimer by Computational Protein Design


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.218
  • R-Value Work: 0.193

Literature

Macromolecules
Sequence Display for 1JML

Classification: PROTEIN BINDING

Total Structure Weight: 8259.21

Macromolecule Entities
Molecule Chains Length Organism Details
Protein L A 72 Finegoldia magna Fragment: B1 DOMAIN
Mutation: Y47W, A52V, D53P, G55A
Gene Name(s):
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ZN
Query on ZN

A ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.218
  • R-Value Work: 0.193
  • Space Group: C 2 2 21

Unit Cell:

Length (Å) Angle (°)
a = 46.76 α = 90.00
b = 76.74 β = 90.00
c = 59.80 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2001-07-19
  • Released Date: 2001-10-10
  • Deposition author(s): O'Neill, J.W., Kuhlman, B., Kim, D.E., Zhang, K.Y.J., Baker, D.

Revision History

  • Version 1_0: 2001-10-10

    Type: Initial release

  • Version 1_1: 2008-04-27

    Type: Version format compliance

  • Version 1_2: 2011-07-13

    Type: Derived calculations, Source and taxonomy, Version format compliance

  • Version 1_3: 2017-02-01

    Type: Structure summary

  • Version 1_4: 2017-10-04

    Type: Refinement description