1JM6

Pyruvate dehydrogenase kinase, isozyme 2, containing ADP


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.262
  • R-Value Work: 0.202

Literature

Macromolecules
Sequence Display for 1JM6

Classification: TRANSFERASE

Total Structure Weight: 93214.05

Macromolecule Entities
Molecule Chains Length Organism Details
Pyruvate dehydrogenase kinase, isozyme 2 A, B 407 Rattus norvegicus EC#: 2.7.11.2 IUBMB
Gene Name(s): Pdk2
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ADP
Query on ADP

A, B ADENOSINE-5'-DIPHOSPHATE
C10 H15 N5 O10 P2
XTWYTFMLZFPYCI-KQYNXXCUSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MG
Query on MG

A, B MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.262
  • R-Value Work: 0.202
  • Space Group: P 1 21 1

Unit Cell:

Length (Å) Angle (°)
a = 71.42 α = 90.00
b = 109.87 β = 104.52
c = 71.41 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2001-07-17
  • Released Date: 2001-10-24
  • Deposition author(s): Steussy, C.N., Popov, K.M., Bowker-Kinley, M.M., Sloan, R.B., Harris, R.A., Hamilton, J.A.

Revision History

  • Version 1_0: 2001-10-24

    Type: Initial release

  • Version 1_1: 2008-04-27

    Type: Version format compliance

  • Version 1_2: 2011-07-13

    Type: Version format compliance