1JGU

STRUCTURAL BASIS FOR DISFAVORED ELIMINATION REACTION IN CATALYTIC ANTIBODY 1D4


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.229
  • R-Value Work: 0.209

Literature

Macromolecules
Sequence Display for 1JGU

Classification: IMMUNE SYSTEM

Total Structure Weight: 48008.75

Macromolecule Entities
Molecule Chains Length Organism Details
Antibody Light Chain L 220 Mus musculus Mutation: D1E, I27BL, E34H, Y87F, F89S, G91S, S97T, G100A, N103K, I106L
Gene Name(s): Igkv8-30 Gm10883
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Antibody Heavy Chain H 217 Mus musculus Gene Name(s): Ighg AU044919
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
HBC
Query on HBC

H (2-AMINO-3-PHENYL-BICYCLO[2.2.1]HEPT-2-YL)- PHENYL-METHANONE
BICYCLO[2.2.1]HEPTANE (Synonym)
C20 H21 N O
XJQDTOANLAPEIM-JRBPQWBISA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
OH
Query on OH

H HYDROXIDE ION
H O
XLYOFNOQVPJJNP-UHFFFAOYSA-M
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.229
  • R-Value Work: 0.209
  • Space Group: P 1 21 1

Unit Cell:

Length (Å) Angle (°)
a = 68.37 α = 90.00
b = 48.63 β = 106.77
c = 69.37 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2001-06-26
  • Released Date: 2001-12-05
  • Deposition author(s): Larsen, N.A., Heine, A., Crane, L., Cravatt, B.F., Lerner, R.A., Wilson, I.A.

Revision History

  • Version 1_0: 2001-12-05

    Type: Initial release

  • Version 1_1: 2008-04-27

    Type: Version format compliance

  • Version 1_2: 2011-07-13

    Type: Version format compliance