1JDS

5'-DEOXY-5'-METHYLTHIOADENOSINE PHOSPHORYLASE COMPLEX WITH PHOSPHATE (SPACE GROUP P21)


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.249
  • R-Value Work: 0.220

Literature

Macromolecules
Sequence Display for 1JDS

Classification: TRANSFERASE

Total Structure Weight: 155883.42

Macromolecule Entities
Molecule Chains Length Organism Details
5'-METHYLTHIOADENOSINE PHOSPHORYLASE A, B, C..., D, E, FA, B, C, D, E, F 236 Sulfolobus solfataricus EC#: 2.4.2.1 IUBMB
Gene Name(s): SSO2706
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
TRS
Query on TRS

A, B, C, D, E, F 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
TRIS BUFFER (Synonym)
C4 H12 N O3
LENZDBCJOHFCAS-UHFFFAOYSA-O
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
PO4
Query on PO4

A, B, C, D, E, F PHOSPHATE ION
O4 P
NBIIXXVUZAFLBC-UHFFFAOYSA-K
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.249
  • R-Value Work: 0.220
  • Space Group: P 1 21 1

Unit Cell:

Length (Å) Angle (°)
a = 101.50 α = 90.00
b = 86.20 β = 119.20
c = 102.10 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2001-06-15
  • Released Date: 2001-10-26
  • Deposition author(s): Appleby, T.C., Mathews, I.I., Porcelli, M., Cacciapuoti, G., Ealick, S.E.

Revision History

  • 2008-04-27
    Type: Version format compliance
  • 2011-07-13
    Type: Version format compliance