1J8D

Structure Of the metal-free form of the deoxy-D-mannose-octulosonate 8-phosphate phosphatase (YrbI) From Haemophilus Influenzae (HI1679)


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Free: 0.258
  • R-Value Work: 0.176

Literature

Macromolecules
Sequence Display for 1J8D

Classification: HYDROLASE

Total Structure Weight: 79226.29

Macromolecule Entities
Molecule Chains Length Organism Details
deoxy-D-mannose-octulosonate 8-phosphate phosphatase A, B, C, D 180 Haemophilus influenzae EC#: 3.1.3.45 IUBMB
Mutation: M1M, M46M, M48M, M92M, M151M, M154M, M178M
Gene Name(s): HI_1679
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
GOL
Query on GOL

D GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
MSE
Query on MSE
A, B, C, D L-PEPTIDE LINKING C5 H11 N O2 Se MET

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Free: 0.258
  • R-Value Work: 0.176
  • Space Group: I 2 2 2

Unit Cell:

Length (Å) Angle (°)
a = 67.77 α = 90.00
b = 132.30 β = 90.00
c = 140.97 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2001-05-21
  • Released Date: 2002-02-27
  • Deposition author(s): Lim, K., Herzberg, O., Structure 2 Function Project (S2F)

Revision History

  • Version 1_0: 2002-02-27

    Type: Initial release

  • Version 1_1: 2008-04-27

    Type: Version format compliance

  • Version 1_2: 2011-07-13

    Type: Source and taxonomy, Version format compliance