1J58

Crystal Structure of Oxalate Decarboxylase


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.75 Å
  • R-Value Free: 0.197
  • R-Value Work: 0.176

Literature

Macromolecules
Sequence Display for 1J58

Classification: METAL BINDING PROTEIN

Total Structure Weight: 44223.16

Macromolecule Entities
Molecule Chains Length Organism Details
YVRK PROTEIN A 385 Bacillus subtilis EC#: 4.1.1.2 IUBMB
Gene Name(s): oxdC yvrK BSU33240
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
MN
Query on MN

A MANGANESE (II) ION
Mn
WAEMQWOKJMHJLA-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
FMT
Query on FMT

A FORMIC ACID
C H2 O2
BDAGIHXWWSANSR-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MG
Query on MG

A MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
MSE
Query on MSE
A L-PEPTIDE LINKING C5 H11 N O2 Se MET

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.75 Å
  • R-Value Free: 0.197
  • R-Value Work: 0.176
  • Space Group: H 3 2

Unit Cell:

Length (Å) Angle (°)
a = 154.70 α = 90.00
b = 154.70 β = 90.00
c = 123.70 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2002-02-25
  • Released Date: 2002-07-03
  • Deposition author(s): Anand, R., Dorrestein, P.C., Kinsland, C., Begley, T.P., Ealick, S.E.

Revision History

  • 2008-04-26
    Type: Version format compliance
  • 2011-07-13
    Type: Derived calculations, Version format compliance