1J2R

Crystal structure of Escherichia coli gene product Yecd at 1.3 A resolution


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.3 Å
  • R-Value Free: 0.165
  • R-Value Work: 0.145

Literature

Macromolecules
Sequence Display for 1J2R

Classification: Structural genomics unknown function

Total Structure Weight: 88596.94

Macromolecule Entities
Molecule Chains Length Organism Details
Hypothetical isochorismatase family protein yecD A, B, C, D 199 Escherichia coli Mutation: A103T
Gene Name(s): yecD b1867 JW5307
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
MPD
Query on MPD

A, B, C, D (4S)-2-METHYL-2,4-PENTANEDIOL
C6 H14 O2
SVTBMSDMJJWYQN-YFKPBYRVSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.3 Å
  • R-Value Free: 0.165
  • R-Value Work: 0.145
  • Space Group: P 21 21 2

Unit Cell:

Length (Å) Angle (°)
a = 140.50 α = 90.00
b = 108.89 β = 90.00
c = 50.42 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2003-01-09
  • Released Date: 2004-01-27
  • Deposition author(s): Suhre, K., Claverie, J.-M., Abergel, C., Bacterial targets at IGS-CNRS, France (BIGS)

Revision History

  • 2008-04-27
    Type: Version format compliance
  • 2011-07-13
    Type: Derived calculations, Version format compliance