1J04

Structural mechanism of enzyme mistargeting in hereditary kidney stone disease in vitro


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.6 Å
  • R-Value Free: 0.273
  • R-Value Work: 0.223

Literature

Macromolecules
Sequence Display for 1J04

Classification: TRANSFERASE

Total Structure Weight: 44126.82

Macromolecule Entities
Molecule Chains Length Organism Details
alanine--glyoxylate aminotransferase A 392 Homo sapiens EC#: 2.6.1.51 IUBMB
Mutation: G170R, K209X
Gene Name(s): AGXT Gene View AGT1 SPAT
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
GOL
Query on GOL

A GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
AOA
Query on AOA

A (AMINOOXY)ACETIC ACID
C2 H5 N O3
NQRKYASMKDDGHT-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
LLP
Query on LLP
A L-PEPTIDE LINKING C14 H22 N3 O7 P LYS

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.6 Å
  • R-Value Free: 0.273
  • R-Value Work: 0.223
  • Space Group: P 41 21 2

Unit Cell:

Length (Å) Angle (°)
a = 89.49 α = 90.00
b = 89.49 β = 90.00
c = 142.82 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2002-10-30
  • Released Date: 2003-11-11
  • Deposition author(s): Zhang, X., Djordjevic, S., Bartlam, M., Ye, S., Rao, Z., Danpure, C.J.

Revision History

  • Version 1_0: 2003-11-11

    Type: Initial release

  • Version 1_1: 2008-04-27

    Type: Version format compliance

  • Version 1_2: 2011-07-13

    Type: Derived calculations, Version format compliance