1IY8

Crystal Structure of Levodione Reductase


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.6 Å
  • R-Value Free: 0.219
  • R-Value Work: 0.199

Literature

Macromolecules
Sequence Display for 1IY8

Classification: OXIDOREDUCTASE

Total Structure Weight: 229815.23

Macromolecule Entities
Molecule Chains Length Organism Details
LEVODIONE REDUCTASE A, B, C..., D, E, F, G, HA, B, C, D, E, F, G, H 267 Leifsonia aquatica Gene Name(s): lvr
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NAD
Query on NAD

A, B, C, D, E, F, G, H NICOTINAMIDE-ADENINE-DINUCLEOTIDE
C21 H27 N7 O14 P2
BAWFJGJZGIEFAR-NNYOXOHSSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MRD
Query on MRD

A, B, C, D, E, F, G, H (4R)-2-METHYLPENTANE-2,4-DIOL
C6 H14 O2
SVTBMSDMJJWYQN-RXMQYKEDSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
NAD N/A in BindingDB
Ki: 23800000 nM  BindingMOAD
N/A in PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.6 Å
  • R-Value Free: 0.219
  • R-Value Work: 0.199
  • Space Group: P 1

Unit Cell:

Length (Å) Angle (°)
a = 66.67 α = 103.87
b = 79.18 β = 91.40
c = 112.67 γ = 105.48

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2002-07-25
  • Released Date: 2003-05-27
  • Deposition author(s): Sogabe, S., Fukami, T., Shiratori, Y., Yoshizumi, A., Wada, M.

Revision History

  • Version 1_0: 2003-05-27

    Type: Initial release

  • Version 1_1: 2008-04-27

    Type: Version format compliance

  • Version 1_2: 2011-07-13

    Type: Version format compliance