1HY7

A CARBOXYLIC ACID BASED INHIBITOR IN COMPLEX WITH MMP3


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.5 Å
  • R-Value Free: 0.220
  • R-Value Work: 0.188

Literature

Macromolecules
Sequence Display for 1HY7

Classification: HYDROLASE

Total Structure Weight: 39738.61

Macromolecule Entities
Molecule Chains Length Organism Details
STROMELYSIN-1 A, B 173 Homo sapiens EC#: 3.4.24.17 IUBMB
Fragment: CATALYTIC DOMAIN, RESIDUES 100-272
Gene Name(s): MMP3 Gene View STMY1
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
MBS
Query on MBS

B R-2-{[4'-METHOXY-(1,1'-BIPHENYL)-4-YL]-SULFONYL}- AMINO-6-METHOXY-HEX-4-YNOIC ACID
C20 H21 N O6 S
QJKGJGURDPRKGW-LJQANCHMSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ZN
Query on ZN

A, B ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CA
Query on CA

A, B CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
MBS IC50: 4090 nM (100) BindingDB

IC50: 4090 nM  BindingMOAD
IC50: 4090 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.5 Å
  • R-Value Free: 0.220
  • R-Value Work: 0.188
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 37.92 α = 90.00
b = 78.06 β = 90.00
c = 105.80 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2001-01-18
  • Released Date: 2002-01-18
  • Deposition author(s): Natchus, M.G., Bookland, R.G., Laufersweiler, M.J., Pikul, S., Almstead, N.G., De, B., Janusz, M.J., Hsieh, L.C., Gu, F., Pokross, M.E., Patel, V.S., Garver, S.M., Peng, S.X., Branch, T.M., King, S.L., Baker, T.R., Foltz, D.J., Mieling, G.E.

Revision History

  • Version 1_0: 2002-01-18

    Type: Initial release

  • Version 1_1: 2008-04-27

    Type: Version format compliance

  • Version 1_2: 2011-07-13

    Type: Derived calculations, Version format compliance

  • Version 1_3: 2017-10-04

    Type: Refinement description