1HVB

CRYSTAL STRUCTURE OF STREPTOMYCES R61 DD-PEPTIDASE COMPLEXED WITH A NOVEL CEPHALOSPORIN ANALOG OF CELL WALL PEPTIDOGLYCAN


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.17 Å
  • R-Value Free: 0.153
  • R-Value Work: 0.113

Literature

Macromolecules
Sequence Display for 1HVB

Classification: HYDROLASE

Total Structure Weight: 38173.35

Macromolecule Entities
Molecule Chains Length Organism Details
D-ALANYL-D-ALANINE CARBOXYPEPTIDASE A 349 Streptomyces sp. r61 EC#: 3.4.16.4 IUBMB
Gene Name(s):
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
CEH
Query on CEH

A 5-{3-(S)-(4-(R)-ACETYLAMINO-4-CARBOXY-BUTYRYLAMINO)- 3-[1-(R)-(1-(R)-CARBOXY-ETHYLCARBAMOYL)-ETHYLCARBAMOYL]- PROPYL}-2-(CARBOXY-PHENYLACETYLAMINO-METHYL)- 3,6-DIHYDRO-2H-[1,3]THIAZINE-4-CARBOXYLIC ACID
CEPHALOSPORIN ANALOG (Synonym)
C32 H42 N6 O13 S
PEUIVMLYMKXUBF-PULJXETJSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.17 Å
  • R-Value Free: 0.153
  • R-Value Work: 0.113
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 50.78 α = 90.00
b = 66.66 β = 90.00
c = 100.93 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2001-01-08
  • Released Date: 2001-02-07
  • Deposition author(s): McDonough, M.A., Lee, W., Silvaggi, N.R., Mobashery, S., Kelly, J.A.

Revision History

  • Version 1_0: 2001-02-07

    Type: Initial release

  • Version 1_1: 2008-04-27

    Type: Version format compliance

  • Version 1_2: 2011-07-13

    Type: Source and taxonomy, Version format compliance